Sinorhizobium medicae: Smed_0056
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Entry
Smed_0056 CDS
T00555
Name
(GenBank) tRNA pseudouridine synthase A
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
smd
Sinorhizobium medicae
Brite
KEGG Orthology (KO) [BR:
smd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
smd03016
]
Smed_0056
Enzymes [BR:
smd01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
Smed_0056
Transfer RNA biogenesis [BR:
smd03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
Smed_0056
Prokaryotic type
Smed_0056
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
DUF2344
Motif
Other DBs
NCBI-ProteinID:
ABR58916
UniProt:
A6U5I6
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All DBs
Position
58914..59657
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AA seq
247 aa
AA seq
DB search
MPRFRLIVEYDGTDYVGWQRQDNGPSVQGAIEKAVLSLTGETVRVRGAGRTDSGVHARGQ
VAHLDLTRAWKPYTLQNALNAHLSLAGERVSILEVEEAAADFDARFSAIRRHYLYRIISR
RSPLALEARRAWWVPKALDHDAMHEAAQRLLGHHDFTTFRSANCQATSPMRTLDRLDVTR
TGDLIEIRASAQSFLHNQIRSFAGSLKLVGESKWTPDNLQAALEARDRKACGPVAPPDGL
YFMRVDY
NT seq
744 nt
NT seq
+upstream
nt +downstream
nt
atgccccgctttcgcctgatcgtcgaatatgacggtaccgattatgtcggctggcagcgg
caggacaacggcccctctgttcaaggagcgatcgaaaaagcggtcctgtcgcttacgggc
gagacggtccgggtccgcggcgcagggcgaaccgattccggcgttcacgccaggggtcag
gtggctcatctcgatctaacccgcgcgtggaagccgtacacgcttcaaaacgccctcaac
gcgcatctgtcgcttgccggcgagcgcgtttcgatcctggaggtcgaggaagccgccgcc
gatttcgacgcgcgtttctcggccatccgccgacactatctctatcggatcatttcccgc
cgatcaccgctggcgcttgaggcgcgccgtgcctggtgggtgccgaaggcgcttgatcat
gacgcaatgcacgaggcagcgcagcgcctcttgggccatcacgacttcacgaccttccgc
tctgccaactgccaggcgacgagcccgatgcgcacgctggaccggctggacgtcacgcgc
acgggcgacctgatcgaaatccgcgccagcgcgcaaagcttccttcataaccagatccgt
tctttcgcgggctccttgaagctggtcggcgagagcaaatggacgccggacaacctccaa
gccgcgctcgaggcgcgggaccgcaaagcctgcggtccggtcgccccgccggacggactt
tatttcatgcgcgtcgattactga
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