Sinorhizobium medicae: Smed_0110
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Entry
Smed_0110 CDS
T00555
Name
(GenBank) AMP-dependent synthetase and ligase
KO
K01897
long-chain acyl-CoA synthetase [EC:
6.2.1.3
]
Organism
smd
Sinorhizobium medicae
Pathway
smd00061
Fatty acid biosynthesis
smd00071
Fatty acid degradation
smd01100
Metabolic pathways
smd01212
Fatty acid metabolism
smd02024
Quorum sensing
Module
smd_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
smd00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
Smed_0110
00071 Fatty acid degradation
Smed_0110
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
Smed_0110
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
smd01004
]
Smed_0110
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
smd04147
]
Smed_0110
Enzymes [BR:
smd01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
Smed_0110
Lipid biosynthesis proteins [BR:
smd01004
]
Acyl-CoA synthetase
Long/very long chain acyl-CoA synthetase
Smed_0110
Exosome [BR:
smd04147
]
Exosomal proteins
Exosomal proteins of breast milk
Smed_0110
Exosomal proteins of breast cancer cells
Smed_0110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
Motif
Other DBs
NCBI-ProteinID:
ABR58970
UniProt:
A6U5P0
LinkDB
All DBs
Position
complement(121776..123476)
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AA seq
566 aa
AA seq
DB search
MAEASTQQAGSSTAKIWLASYPPGVPAEIGPLTYRSIGEFFDHAVAQHSWRPAFTCMGKA
LTFSDLNAYSAKIGAWLQSLGLAKGDRVAVMMPNVLQNPVIVYGILRAGFTVVNVNPLYT
PRELEHQLVDSGAKAIFVLENFAHTVEQVLARTAVKHVVVASMGDMLGAKGLIVNLVVRR
VKKLVPAWSIPGHLSFGAVLARGAKLGFKRANVAPSDIAFLQYTGGTTGVSKGATLTHAN
LLSNMAQMELWLNTAFLRKPRPESLTFMCALPLYHIFALTVNSLMGLATGGNNILIPNPR
DIPAFVKELGKYRTNIFPGLNTLFNALMNNAEFRKVDFSSLILTFGGGMAVQRPVAERWL
EMTGCPIHEGYGLSETSPVATANRLDTDDFTGTIGIPLPSTEVEIRDEDGNTLPLGEVGE
ICIRGPQVMAGYWQRPEETAKAISPDGFFRTGDVGFMNTEGLTKIVDRKKDMILVSGFNV
FPNEIEEVAATHPGILECAAIGIADPHSGEAVKLFVVLKDPNLTEEEIKRHCAASLTNYK
RPRFVEVRTELPKSNVGKILRKDLRG
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atggcggaagcaagtacgcagcaggcaggttccagcacggcgaagatctggctcgcatca
tacccgccgggcgtgcctgccgagatcggccctctcacctatcgttccatcggagaattt
ttcgatcatgcggtcgcgcaacattcctggcggcccgcattcacctgcatgggaaaggcg
ctgaccttctcggacctcaatgcgtattcggcaaagatcggcgcctggctgcagtcgctg
ggtcttgcgaagggcgacagggtcgcggtgatgatgcccaatgtcctgcaaaatcccgtc
atcgtctatggaatcctgcgagccggcttcaccgtcgtcaacgtcaatccgctctatacg
ccgcgcgaactggagcatcagctggtcgactccggcgccaaggcgatcttcgtgcttgag
aacttcgcgcatactgtcgagcaggttcttgcccgcacggcggtcaagcatgtggtggtc
gccagcatgggcgacatgctcggcgcaaaagggttgatcgtcaatctggtggtgcgccgc
gtcaagaagctcgtccccgcctggtcgattcccggacatctttcgttcggggcggttctt
gccaggggagcgaaactcggcttcaagcgggcgaacgtggcaccgtcggatatcgccttc
ctgcaatataccggtggcaccaccggcgtttccaagggcgcaacgctgacgcacgccaat
cttctttccaacatggcccagatggaactgtggctgaacacggccttcctgcgcaagccg
cgcccggaaagcctcaccttcatgtgcgcgctgccgctctatcacatcttcgcgcttacg
gtgaattcgctgatgggtcttgcgaccggcggcaacaatatcttgataccgaatccgcgc
gacattcccgccttcgtcaaggaactcggaaagtaccggacgaacattttcccgggcctg
aacacactgttcaatgcgttgatgaacaatgccgagttccgcaaggtggacttctcgtcg
ctgatcctgaccttcggcggcgggatggcagtgcagcgaccggtcgccgaacgctggctg
gaaatgacgggctgccctatccacgagggctacgggctttcggagacatcgcccgtcgcg
accgccaatcgcctcgataccgacgacttcaccggcacgatcggcataccgctgccctcg
acggaggtggagatccgcgacgaggacggaaataccctccccttgggtgaagtcggcgaa
atatgcatccgcgggccgcaggtgatggcaggttactggcagcgccccgaggaaacggcg
aaagccatttcgccggacggcttcttccggaccggcgatgtcggcttcatgaacaccgag
gggctcaccaagatcgtcgatcgcaagaaggatatgattctcgtctcggggttcaacgtg
ttcccgaacgagatcgaagaggtggcggcgacccatcccggcattctcgaatgtgccgca
atcggtattgccgatccgcattccggcgaagcggtcaagctcttcgtcgtgcttaaggat
ccgaatctcactgaagaagagatcaagcgccactgcgcagccagtcttaccaactacaag
cggccgcgtttcgtggaagtccgcaccgaactgccgaaatcgaatgtcggcaagatcctg
cgcaaggacttgcgcggctag
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