Sinorhizobium medicae: Smed_0318
Help
Entry
Smed_0318 CDS
T00555
Name
(GenBank) PAS/PAC sensor signal transduction histidine kinase
Organism
smd
Sinorhizobium medicae
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HATPase_c
HisKA
PAS_9
PAS_8
PAS
PAS_4
PAS_7
Diguanyl_cycl_sensor
Collagen_trimer
HATPase_c_3
Motif
Other DBs
NCBI-ProteinID:
ABR59176
UniProt:
A6U696
LinkDB
All DBs
Position
complement(344380..347796)
Genome browser
AA seq
1138 aa
AA seq
DB search
MPERQYPFIDIAVHARVREHFARGDASVLFSRDIARVLWANDQGAKLFGTASVYDFIDTD
LDPKDLSFRQLRAAAAQLATVGDRRQLLIRVAAGFRRLPLGATVEMIRIGTAEDAVLFTV
PENGKALSTEERAEAMIAGLDGPDTHMAVLDSDGTIIAGSPGFESLGLSADIRRTLVAAV
ARDKDRLIKRPVATEKGRLPAAVGKISEHPALHLLFAVEAILEDSEAGEPVNSAAQGRAA
SAMPGGEIDVQEAVPSSTTPAETDQAPAKLDGSERAPAGETAATSEDEAPIEETTCEEVQ
GERASKDVDAEAEAADAEHAAPETLRETEKASSENAVEADQRREAADFVFAAGGRAVRFV
WKIDAEGHFSEISEEFASAVGPKAADVIGVTFTELAGRYGLDPDNRINELLHRRDTWSGK
TIFWPVQGTNLKVPVDLAALPTYSRSREFDGFRGFGIVRVADAVPDAKAAGLSLDRAPAQ
KSSAAPEGADGPNAGSPPETGPADRRHAEAGNGKDAERVAPDPSEDPFRGEQPALRAVDT
PDRPPSDKIIDLDQRRPAGAGTLTRGEQAAFREIAKQLGEHFSVHDPLPPSQTEAESRPE
AETFPTSKPANAEENEHTEATEAAGEQKSEAPAAAMEPGPPARTGAGISSETLDRLPVAL
LVHHGDELLHGNAEFLRLTGYDDLDAFAHEGGLEALFALGNEAGAARPDGTMTLVRKDGR
LIPVGAHLHSIRWEGKSALMLALTPAGASEAERQARDAESAAEASRLRMEIDELRSILET
ATDGVVVLGQEGDIRTMNRSASALFDYDEAEMRGKPFATLFAHESQKAVIDYLHGLAGHG
VASVLNDGREVIGREAAGGFIPLFMTIGRLSSSNGYCAVIRDITQWKRTEEELRNAKRAA
ETANAHKTEFLARVSHEIRTPLNAIIGFSDMMASEHFGPIGHPRYIEYAGDIGRSGRHVL
DIVNDLLDISKIEAGEMDLDFGAVDLNEAVSEAVSLVQPQANSQRVIIRTSLSGSVPEVV
ADDRSIKQIALNILANAIRFTPSGGQIVVSTSYEANGSVILRIRDTGIGMTRNELDQAMK
PFRQVTTGGRKRGDGTGLGLPLTKAMTEANRAQFAITSAPNEGTLVEVSFPSQRVLAN
NT seq
3417 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaaagacagtatcccttcatcgacattgccgtgcatgcgcgggtgcgggagcac
tttgcccgcggggatgcctccgtcctcttttcaagggatatcgcgcgggtgctatgggca
aacgaccagggtgcaaagctgttcgggacagcttccgtttacgacttcatagacaccgac
ctcgatccgaaagacctttcattccgccagttgcgcgcggctgccgcgcagctcgcgact
gtcggagaccggcggcagcttctgatccgcgtggccgcgggatttcggcggcttccgctc
ggcgcaaccgtcgagatgatccgcatcgggaccgccgaagacgcggttctgttcacggtg
ccggagaacggcaaggcactctcgaccgaggagcgcgccgaggcgatgattgcgggtctc
gacggccccgatacacatatggcggtactcgacagcgacggcaccatcatcgccggatcg
cccggcttcgagagccttggcctctcggccgatattcgccgcacgctcgttgccgccgtt
gcacgcgacaaggaccggctgatcaagcgtcccgtcgcgacggaaaaggggcgcctgccc
gcggcagtcggcaagatttccgaacatccggcactccacctgctcttcgcagtcgaggcg
atcctggaagattccgaggccggcgagcctgtcaattccgcagctcaggggcgggcggcg
tccgcgatgcctggtggagaaatcgacgtgcaggaggcggttccttcgtccacgacaccg
gcggagacggaccaggcgccggcaaagcttgacggctccgagcgcgctcccgccggggag
acggcagcaacgagcgaagatgaggcgcctatcgaggaaaccacctgcgaagaggtgcaa
ggggaacgcgcttcgaaggacgtggacgccgaggcggaggccgccgacgcagagcacgcc
gcgccggagacgctgcgcgagacagaaaaggcctcgtccgaaaatgcggtcgaagcggac
cagcgccgcgaagccgccgatttcgtcttcgcggccggcggacgggcggttcggttcgtc
tggaagatcgacgcagagggacatttcagcgaaatctccgaagagttcgcatcggccgtc
ggtccgaaagccgccgacgtcatcggcgtgacatttaccgaactcgccggtcgctacggt
ctcgatccggacaacaggatcaacgaacttctgcatcgccgcgatacctggtccggcaag
acgatcttctggcccgtccaggggacaaatctcaaagtgcccgtcgatcttgccgcgctg
cctacctattcccgttcgcgcgaattcgacggtttccgaggcttcggcatcgtcagggtt
gccgacgccgttccggacgcaaaagcggccgggctttcgctcgaccgcgcgccggcgcag
aagtcgagcgccgcgcccgagggtgccgacgggccgaatgcaggctctccccccgagacc
ggacctgcggacaggcgccatgcggaggcaggcaacggcaaggatgcggagcgtgttgcg
cccgatccttctgaagaccccttccgcggcgaacagcctgcattgcgagccgtcgacacg
cccgaccggccgccctccgataaaatcatcgatctcgaccagcgccgcccggcgggtgcc
ggcacgctgacgcgcggcgagcaggcagccttccgcgaaatcgcaaagcagctcggcgag
catttcagcgttcatgatccgctgccgcctagccagaccgaagcggaaagcagaccagag
gccgagaccttcccgacaagcaagccggcaaacgcggaagagaacgaacacacggaagcg
acagaggcggcaggcgagcagaaaagcgaggctccggctgccgcaatggagcctggtccc
cctgcacgcaccggtgccggcatcagcagcgaaaccctcgacaggctcccggtggccttg
ctggttcatcacggtgacgagttgctgcatggcaatgcggaatttctgcggctgaccgga
tatgacgacctcgatgcctttgcgcatgagggcggcctggaggcccttttcgccctcggc
aacgaggccggcgcggcaaggccggatggaaccatgaccctggtccgcaaggatggcagg
ctcataccggtcggcgcccatctgcattcgatccggtgggaaggaaagagcgcgctcatg
cttgcgctcactccggccggcgcaagcgaagctgaaaggcaggcgcgcgacgcggaaagc
gcagcggaggcaagccggctccggatggagatcgacgaactccgatcgatcctggaaacc
gctacggacggtgttgtggtcctcggacaggagggcgacatccggacgatgaatcgctcc
gcaagcgcgcttttcgactatgacgaggccgagatgcgcgggaagcccttcgccacgctc
tttgctcacgagagccagaaggcagtgatcgattatctccacggtctcgccggccatggc
gttgcaagcgtgctcaatgacggccgggaagtgatcggccgcgaagctgccggcggcttc
attccgctgttcatgacaatcgggcggctctcctcctccaacggctactgcgccgtcatc
cgcgacatcactcaatggaagcggaccgaagaggaactgcgaaacgccaagcgcgccgcc
gagacggcaaatgcgcacaagacggagtttcttgcccgggtcagccacgagatccggacg
ccgctcaacgccatcatcggcttctccgacatgatggcgagcgaacatttcggcccgatc
ggccatccgcgatacatcgagtatgccggcgatatcggccggtcgggtcggcatgtcctc
gacatcgtcaacgatctgctcgacatctcgaagatcgaggccggcgaaatggacctggac
ttcggcgccgtggacctcaacgaagccgtgtcggaggccgtctcgctggtgcagccgcag
gccaacagccagcgcgtgatcatccgcacatcgctttcgggctccgttcccgaggtcgtg
gccgacgaccggtcgatcaagcagatcgctctgaacattctcgcaaatgcaatacgcttc
acgccatcgggcggccagatcgtcgtgtcgacctcctacgaggccaatggcagcgtaatc
ctaaggatccgcgacaccggcatcggcatgacccgcaacgagctcgaccaggcgatgaag
cccttccgccaggtcacgaccggcggccgcaagcgtggcgacggcaccggcctcggcctg
ccgctgacgaaggccatgacggaagcgaaccgcgcgcagttcgccatcacatctgctccg
aatgaaggcacgctggtggaagtatcctttccctcacaacgcgtcttggccaattga
DBGET
integrated database retrieval system
