Sinorhizobium medicae: Smed_0408
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Entry
Smed_0408 CDS
T00555
Name
(GenBank) chaperonin GroEL
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
smd
Sinorhizobium medicae
Pathway
smd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Smed_0408
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smd03019
]
Smed_0408
03110 Chaperones and folding catalysts [BR:
smd03110
]
Smed_0408
03029 Mitochondrial biogenesis [BR:
smd03029
]
Smed_0408
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
smd04147
]
Smed_0408
Enzymes [BR:
smd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
Smed_0408
Messenger RNA biogenesis [BR:
smd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
Smed_0408
Chaperones and folding catalysts [BR:
smd03110
]
Heat shock proteins
HSP60 / Chaperonin
Smed_0408
Mitochondrial biogenesis [BR:
smd03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
Smed_0408
Exosome [BR:
smd04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
Smed_0408
Exosomal proteins of other body fluids (saliva and urine)
Smed_0408
Exosomal proteins of breast cancer cells
Smed_0408
Exosomal proteins of colorectal cancer cells
Smed_0408
Exosomal proteins of bladder cancer cells
Smed_0408
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-ProteinID:
ABR59265
UniProt:
A6U6I5
LinkDB
All DBs
Position
complement(438560..440197)
Genome browser
AA seq
545 aa
AA seq
DB search
MAAKEVKFGRSAREKMLRGVDILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEI
ELEDKFENMGAQMVREVASKTNDIAGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGI
DLAVAEVVKDLLAKAKKINTSDEVAQVGTISANGEKQIGLDIAEAMQKVGNEGVITVEEA
KTAETELEVVEGMQFDRGYLSPYFVTNPEKMVADLEDAYILLHEKKLSNLQAMLPVLEAV
VQTGKPLLIIAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLEDIAILTGGTV
ISEDLGIKLESVTLDMLGRAKKVSITKENTTIVDGAGQKSDIEGRVAQIKAQIEETTSDY
DREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRIDDALNATRAAVQEGIVPGGGVALL
RSSVKITVKGENDDQDAGVNIVRRALQSPARQIVENAGDEASIVVGKILEKDTDDFGYNA
QTGEYGDMIAMGIIDPVKVVRTALQDAASVASLLITTEAMIAELPKKDAPAMPGGMGGMG
GMDMM
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
atggcagctaaagaagtcaagttcggccgtagcgcgcgcgaaaagatgctgcgcggcgtc
gacattctcgccgacgcggtcaaggtgacgctcggcccgaagggccgtaacgtcgtcatc
gacaaatcgttcggcgcaccgcgcatcaccaaggacggcgtttccgtcgccaaggagatc
gaactcgaagacaagttcgagaacatgggcgcccagatggtccgcgaagttgcttcgaag
accaacgacatcgccggcgacggcacgacgaccgcaaccgttctcgctcaggcaatcgtt
cgcgaaggcgcgaaggccgttgccgccggcatgaacccgatggaccttaagcgcggtatc
gacctcgccgtcgctgaagtcgtcaaggacctgctcgccaaggccaagaagatcaacacc
tcggacgaagtcgcccaggtcggcacgatctcggcaaacggcgaaaagcagatcggtctc
gacatcgccgaagcgatgcagaaggttggcaacgaaggcgtcatcacggttgaagaagcc
aagaccgccgagaccgaactcgaagtcgtcgaaggcatgcagttcgaccgcggttatctg
tcgccctacttcgtcaccaacccggaaaagatggtcgccgacctcgaagacgcttacatt
ctcctgcacgagaagaagctctccaaccttcaggcgatgctcccggttctcgaagccgtc
gtccagaccggcaagccgctcctcatcattgctgaagacgtcgaaggcgaagctcttgca
acgctcgtcgtcaacaagctgcgtggcggcctgaagattgctgccgtcaaggctccgggc
ttcggcgaccgtcgcaaggccatgctcgaagacatcgccatcctgacgggcggcaccgtg
atctcggaagacctcggcatcaagctcgaaagcgtcacgctcgacatgctcggccgtgcg
aagaaggtttcgatcaccaaggaaaatacgacgatcgtcgacggtgccggccagaagtcc
gacatcgaaggccgcgtcgcccagatcaaggcccagatcgaagaaaccacttccgactac
gaccgtgagaagctgcaggagcgccttgccaagctcgctggcggcgttgccgtcatccgc
gtcggcggtgcgacggaagtcgaagtgaaggaaaagaaggaccgcatcgacgacgctctc
aacgcgacgcgcgctgcagttcaggaaggcatcgtaccgggcggcggcgttgctctgctg
cgttcctccgtcaagatcaccgtcaagggtgaaaacgacgaccaggatgccggcgtcaac
atcgttcgccgcgctctgcagtctccggcccgccagatcgtcgaaaacgctggcgacgaa
gcatccatcgttgtcggcaagatcctcgagaaggacaccgacgacttcggttacaacgca
cagaccggcgaatatggtgacatgatcgccatgggcatcatcgacccggtcaaggtcgtt
cgcaccgcgcttcaggacgcagcctcggttgcttcgctgctcatcaccaccgaagccatg
atcgccgagctgccgaagaaggacgctccggcaatgcctggcggcatgggcggcatgggc
ggcatggacatgatgtga
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