Sinorhizobium medicae: Smed_0416
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Entry
Smed_0416 CDS
T00555
Name
(GenBank) pseudouridine synthase
KO
K06178
23S rRNA pseudouridine2605 synthase [EC:
5.4.99.22
]
Organism
smd
Sinorhizobium medicae
Brite
KEGG Orthology (KO) [BR:
smd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
smd03009
]
Smed_0416
Enzymes [BR:
smd01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.22 23S rRNA pseudouridine2605 synthase
Smed_0416
Ribosome biogenesis [BR:
smd03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
Smed_0416
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_2
S4
Motif
Other DBs
NCBI-ProteinID:
ABR59273
UniProt:
A6U6J3
LinkDB
All DBs
Position
448238..449968
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AA seq
576 aa
AA seq
DB search
MTSKDKPTRPGGKAKGRDTKPHSGGEKAAVRAAGSAPAASAAGAEQPQRISKILSRAGVA
SRRDVERMIMEGRVSLNGLVLDTPVVNATLADRIEVDGHPIRGIERTRLWLYHKPGGLVT
TNADPEGRPTVFENLPEDLPRVLSIGRLDINTEGLLLLTNDGGLARVLELPSTGWLRRYR
VRAHGEIDQAALDRLKEGIAVEGVLYGAIEATLDRVQGSNVWITMGLREGKNREIKNVLG
ALGLDVNRLIRISYGPFQLGELPIGQVQEIRGRTLREQLGPRLIADAKANFDAPIYNDQS
TAAEPEAEPVADHGKAEWGSKREKAGDKRERALARLDTRRDDGRPNDRGRSRGKAEERPA
RPPLRRNRSSNVWMAPGARPTVEKKPKAAEDELSPKSTRRAPADVKRRDRAKDPATAKAA
GFDEERKGKAGKSAGRKDAAGGFERRRPLEGAERKSRDHGDRPPRRPEGERAARDPADDR
ASSGGRKETARPPRGDGKKRFADDRPRANAGGKPAAANPSANRSSESRAGKPAGTKPSGG
RRPGGGKPGNRPGGGKPGNRPGGGKSSGKGPQGRGK
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atgacatccaaagacaagcccacgaggcccggcggcaaggccaagggtcgcgacacgaaa
cctcattccggcggcgagaaggctgcagtgcgggcagccggtagcgcgccggccgcgtcg
gctgcgggtgcggaacagccacagcgcatctcgaagatactctcgcgcgcaggcgttgca
tcgcgccgcgacgtcgagcggatgatcatggaagggcgcgtcagtctcaatggcctcgtg
ctcgacacaccggtggtcaacgcgacgctcgccgacaggatcgaagtggacggccatccg
atccgtggcatcgaacggacgcggctttggctctatcacaagccgggcgggctcgtgacg
accaatgccgatccggaaggccggccgacggtcttcgaaaacctgcccgaggatctgccg
cgcgttctgtcgatcggccggctggacatcaacaccgaaggcctgctgctcctgacgaat
gacggcgggcttgcccgcgtgcttgagctgccgtcgacaggctggctgcgccgctaccgc
gtgcgcgcacacggggaaatcgatcaggcggcgctcgaccgcctgaaagagggtatcgcg
gtcgaaggtgtcctttacggggcgatcgaggctactctggatcgggtacagggctcgaac
gtctggatcactatgggcctgcgcgaaggcaagaatcgtgagatcaagaacgtccttggc
gcacttggcctcgacgtaaaccgactgatccgcatctcctatggtccgttccagctcggc
gagttgccgattggtcaggttcaggagattcgcggccgaacgctgcgcgaacagctgggc
ccccggctgatcgccgacgccaaagcgaatttcgacgcgccgatctataacgaccagtcg
actgctgccgagcctgaagcagagcctgtcgccgatcacggcaaggcggaatggggcagc
aagcgcgagaaggccggagacaagcgcgagcgtgctcttgcccgcctcgacacccgccgc
gacgatggccgaccgaacgaccgaggccgcagtcgtggaaaggcggaggaacgtcctgct
cgcccgcctctgagacgcaaccgctcttccaacgtctggatggcgccgggtgcgcgtccg
acggtcgagaaaaagccgaaggctgcggaagacgagctttctccgaaatccacgcggcgc
gcgccggcggacgttaaacgccgcgaccgtgctaaggaccccgccacggcgaaggcagcc
ggctttgatgaggagcgtaagggcaaggcgggtaaatccgccggccgcaaggacgccgcc
ggtggcttcgaaaggcgtcgcccgctcgaaggcgcagagcggaaatcacgcgaccatggc
gatcgtccgccgcgccgtccggagggggagcgggctgcacgcgacccggccgatgaccgc
gcgtcttccggcggccgcaaggagaccgctcggccaccgcgcggcgacggcaagaagcgc
tttgccgacgaccggccacgggcgaacgctggcggcaagccggcggcggcaaacccctcc
gccaatcgctcgtccgaatcgcgcgccggaaaacccgcaggcaccaaaccctccggcggc
aggcggcccggtggaggcaagcccggtaatcgcccgggtggcggcaaacccggtaatcgc
cctggtggcggcaaatcctcgggcaagggaccgcagggcagggggaagtag
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