Sinorhizobium medicae: Smed_0804
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Entry
Smed_0804 CDS
T00555
Name
(GenBank) chaperonin GroEL
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
smd
Sinorhizobium medicae
Pathway
smd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Smed_0804
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smd03019
]
Smed_0804
03110 Chaperones and folding catalysts [BR:
smd03110
]
Smed_0804
03029 Mitochondrial biogenesis [BR:
smd03029
]
Smed_0804
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
smd04147
]
Smed_0804
Enzymes [BR:
smd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
Smed_0804
Messenger RNA biogenesis [BR:
smd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
Smed_0804
Chaperones and folding catalysts [BR:
smd03110
]
Heat shock proteins
HSP60 / Chaperonin
Smed_0804
Mitochondrial biogenesis [BR:
smd03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
Smed_0804
Exosome [BR:
smd04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
Smed_0804
Exosomal proteins of other body fluids (saliva and urine)
Smed_0804
Exosomal proteins of breast cancer cells
Smed_0804
Exosomal proteins of colorectal cancer cells
Smed_0804
Exosomal proteins of bladder cancer cells
Smed_0804
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-ProteinID:
ABR59660
UniProt:
A6U7N0
LinkDB
All DBs
Position
complement(866544..868172)
Genome browser
AA seq
542 aa
AA seq
DB search
MAVKEVRFTSDARDRMLRGVDIMANAVRVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEI
ELEDKFENMGAQMLREVASRTSDIAGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGI
DLAVEAIVRELRTNARKVSKNAEIAQVATISANGDAEIGRYLAEAMEKVGNEGVITVEEA
KTAEIELEVVEGMQFDRGYLSPYFITNQEKMRVELEDAYILLHEKKLSNLQAMIPILESV
IQSGKPLLIIAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKSMLEDIAILTGGTV
ISEELGTKLESATIDILGRAKRVMVEKETTTIVDGAGSKADIGGRVAQIKAQIEDTTSDY
DREKLQERLAKLAGGVAVIRVGGSTEIEVKEKKDRVDDALHATRAAVEEGILPGGGVALL
RVVSVLNGLATANDDQRVGIEIVRRAIEAPVRQIAENAGAEGSIIVGKLREKEDFAFGWN
AQTGEFGDLFQMGVIDPAKVVRAALQDAASVAGLLVTTEAMIAEKPKKDGQPQMPPAPGM
DF
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atggctgtcaaggaagtcagattcaccagcgatgcccgcgatcgcatgctgcgcggcgtg
gatatcatggccaacgccgtgcgcgtgactttgggaccgaaggggcggaacgtcgtcatc
gacaagtcctttggagcgccgcggataaccaaggacggcgtttccgtcgccaaggaaatc
gagctcgaggacaagttcgagaacatgggggcgcagatgctgcgcgaggtggcgtcgcgc
accagcgacatcgccggcgatggcaccaccacggccaccgtactcgcgcaagcaatcgtc
agggaaggcgcgaaggccgtggcggcaggcatgaacccgatggacctgaagcgtggcatc
gatctggccgtcgaggcgatcgtacgggaactcaggaccaacgcccgcaaggtctccaag
aacgccgagatcgctcaggtagccacgatttcggccaatggcgacgcagaaatcggtcgc
taccttgccgaagccatggaaaaggtcggcaacgagggcgtaatcaccgtcgaagaggcc
aagaccgccgagatcgagcttgaagtcgtggagggaatgcagttcgaccgcggctatctc
tcaccctatttcatcaccaaccaggagaagatgagggtggaactggaagacgcctacata
ctgctgcacgagaagaagctctccaacctgcaggcgatgatcccaattctcgaatcggtc
atccagtccggaaagcccctgctgatcattgccgaggacgtcgagggcgaggcactcgcg
acgctggtggtcaacaagctgcgcggcggcctgaagatcgccgcggtcaaggcgcccggc
ttcggcgaccgccgcaagtccatgctcgaggacatcgcgatcctgaccggcggaaccgtc
atctccgaggaactcgggactaagctcgagagcgcgacgatcgacatcctcggccgcgcg
aaacgcgtgatggtcgaaaaggagacgacgacgatcgtcgacggcgccgggtcgaaggcg
gacatcggtggccgcgtcgcccagatcaaggcgcagatcgaggacaccacttccgactac
gatcgggagaagctgcaggagcggctcgccaagctcgcgggcggtgtcgccgtgatccgc
gtcggcggctcgacagagatcgaagtcaaggagaagaaggatcgcgtcgacgatgccctt
catgcgacgcgggcggcggtcgaagaaggcatcctgccgggcggcggcgtggcgctgcta
cgggtcgtcagcgtgctcaacggtcttgcgacggccaacgacgatcagcgcgtgggtatc
gagatcgtccgccgcgctatcgaggcacccgtccgccagatcgccgagaacgccggcgcc
gagggatccattatcgtcgggaagttgcgggagaaagaggattttgcctttggctggaat
gcccagactggtgaattcggcgatctctttcaaatgggcgtcatcgacccagcaaaggtc
gtgcgcgccgccttgcaggacgccgcctccgtcgccggtcttcttgtgacgacggaagcg
atgatcgccgagaaaccgaagaaggacgggcagccgcagatgccgcccgcgccgggcatg
gatttctga
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