Sinorhizobium medicae: Smed_0884
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Entry
Smed_0884 CDS
T00555
Name
(GenBank) type I secretion system ATPase
KO
K11004
ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
Organism
smd
Sinorhizobium medicae
Pathway
smd02010
ABC transporters
smd03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
smd00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
Smed_0884
03070 Bacterial secretion system
Smed_0884
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
smd02000
]
Smed_0884
02044 Secretion system [BR:
smd02044
]
Smed_0884
Transporters [BR:
smd02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB-BAC subgroup
Smed_0884
Secretion system [BR:
smd02044
]
Type I secretion system
alpha-Hemolysin/cyclolysin transporter
Smed_0884
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
ABC_ATPase
Peptidase_C39
AAA_16
AAA_22
AAA_29
AAA_21
MeaB
RsgA_GTPase
nSTAND3
AAA_30
Rad17
AAA_18
NB-ARC
Motif
Other DBs
NCBI-ProteinID:
ABR59739
UniProt:
A6U7V9
LinkDB
All DBs
Position
complement(947312..949492)
Genome browser
AA seq
726 aa
AA seq
DB search
MHRVATSSPGEVPAERIGERQPDSGLSALSAIAGYYRLPANAGAIARQLAITGPAGTDDL
LRAARLIGLKARSIAATAGRIATMPVPAIACLTDSSFAVFGGKSGEGSFRLVNPVDFSSR
DVDTAELLRLTGGRFILIQRRFGGPGADPAAFGFRWFLPSIWRYRRAFGHVLIASLFVQL
FALITPLFFQVVVDKVLAHRSYSTLIVLVVGLAVVGLFDVVLQYLRTYALSHTTNRIDVE
LGRRLFRHLLSLPLDYFETRPTGQTVARIRELETIRAFLTGQGLFSGLDLIFTFVFIFVL
FSYSKTLAWIVVASIPFYLAIGFLVRPFLKERIDEKFERGAWSQQLLVETVVGVQTLKAA
AVEPVVSADWEERLAAYVKSSFLATMLAAKGQNAVQYINKVTSAALLLFGAQAVIDGHLT
VGALVAFNMIAGQVSQPILRLSQLWQDFQQVQVSVSRLADILNAPAEPRPAATISLPPPR
GAIAFKSVGFRYAHNAPDVLKNVTLAVRPGEVLGIVGPSGSGKSTLTKLVQRFYIPQTGQ
VFVDGHDIAQVDPAWLRAGIGVVLQENMLFNRSIHDNIALANPAMSRAAVMRVARLSGAD
EFIAKLPRGYDTQIEERGANLSGGQRQRLAIARALATNPPILILDEATSALDYESERIVL
ANMREIVKGRTVIIIAHRLATVRHCDRIIGMKDGRIIEEGSHEVLVARPNGLYSHLWQLQ
TGAAQA
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atgcatagagtagcgacatcatcacccggcgaagtacctgcagaacgcatcggagaaagg
cagccggacagcggcctgtcggcgctttccgccatcgccggctattaccgcctgccggcg
aatgccggggcaattgcccgtcaactggccatcaccggccccgccggtaccgacgacctc
ctgagagccgcacgcctgatcggcctcaaagcccggtcgattgccgcgacggccggccgt
atcgctacgatgccggtgccggcaatcgcctgcctcacggatagttccttcgccgtcttc
ggcggcaaatccggcgaagggagctttcggctcgtcaatccggtcgatttttccagccgc
gatgtcgataccgccgaactgctgcggctcacgggcggacggttcatcctgattcagcgg
cgcttcggcggaccgggcgctgatccggcagcattcggttttcgctggttcctgccgtcg
atctggcgctaccgccgcgccttcggacatgtgttgatcgcatcgctgttcgtccagctc
ttcgcactgatcacgccgcttttcttccaggtcgtcgtcgacaaggtgctggcgcatcgc
agctattcgacgctgatcgtgctcgtcgtcgggcttgccgtcgtcggcctcttcgatgtc
gtgctccaatatctgcgcacctatgcattgtcgcacaccaccaaccgcatcgatgtcgag
ttggggcgccggctgttccggcatcttctcagcctgccgctcgactatttcgagacgcga
cccaccggccagaccgtcgcccgcatccgcgaactcgaaaccatccgtgccttcctcact
ggccaagggctcttttccggcctcgatctgatcttcaccttcgtcttcatcttcgtgctc
ttcagctattccaagacgcttgcctggatcgtcgtcgcctcgatccccttctatctcgcc
atcggttttctcgttcgtccgttcctgaaggagcgcatcgacgagaagttcgaacgcgga
gcctggagccagcagttgttggtagaaacggtggtcggcgtgcagacgttgaaggcagcg
gcggtcgagcccgtcgtatccgccgattgggaggagcggctcgcagcctatgtgaaatcg
tcctttctcgcgacgatgcttgccgcaaagggccagaatgccgttcaatacatcaacaag
gtgaccagcgccgccctgctgcttttcggcgcacaggcggtgatcgacggccatttgacg
gtcggggcgctcgtcgccttcaacatgatcgcgggccaggtctcgcagcctatccttcgt
ctttcacagctttggcaggattttcagcaggtccaggtctccgtttcgcgcctcgccgac
atcctcaatgcgccggcggagccacgccccgccgcgaccatcagcctcccgcccccacgc
ggcgccatcgccttcaaatcggtcggctttcgctacgcgcacaatgctccggacgtgttg
aaaaatgtgacgctcgcggttcgccccggcgaggtgcttggcatcgttggaccttcagga
tcggggaaatcgacgctgacgaagctcgtacagcgcttctacattccgcaaaccggtcag
gtcttcgtcgatggccacgatatcgcccaggtcgacccggcctggctgcgcgccggaatc
ggcgtcgtgctccaggagaacatgctcttcaaccgctcgatccacgacaatatcgcactg
gccaatccggcgatgtcgcgcgcggcggtgatgcgggtcgcgcgcctttccggcgcggac
gaattcatcgcgaaacttccgcgcggttacgacacgcagatcgaggagcgcggtgccaat
ctctccggcggtcagcggcagcggctggcgatcgctcgcgcgctcgccacgaatcccccg
atccttattctcgacgaggccacgagtgccctcgattacgagagcgagcgtatcgttctc
gccaatatgcgcgagatcgtgaagggccgcaccgtgatcatcatcgcccatcgcctcgcg
accgtgcgccactgcgatcggatcatcggcatgaaggacggccgcatcatcgaggaaggc
tcccatgaggtcctggtcgcccgaccgaacgggctctattcgcatctctggcagctccag
acaggggccgcacaggcatga
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