Sinorhizobium medicae: Smed_0979
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Entry
Smed_0979 CDS
T00555
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
smd
Sinorhizobium medicae
Pathway
smd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
smd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Smed_0979
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smd03021
]
Smed_0979
03400 DNA repair and recombination proteins [BR:
smd03400
]
Smed_0979
Enzymes [BR:
smd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Smed_0979
Transcription machinery [BR:
smd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Smed_0979
DNA repair and recombination proteins [BR:
smd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Smed_0979
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
ABR59832
UniProt:
A6U852
LinkDB
All DBs
Position
1058166..1062371
Genome browser
AA seq
1401 aa
AA seq
DB search
MNQEVMNLFNPQVPAQTFDSIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRISTLLDMTLKDIERVLYFENYIVTEPGLTSLKENQLLSEEEYMIAVDEFGEDQFTA
MIGAEAIYEMLASMNLEKIAGDLRSEMAETTSDLKQKKLMKRLKIVENFMESGNRPEWMI
MKVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIIRNEKRM
LQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEKPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPILVEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGAPIIVPSQDMVLGLYYLSIMNQNEPGEGMAFSDMGELHHALE
TKAVTLHAKIRGRYKTVDAEGNPVSKIYETTPGRMIIGELLPKNPNVPFETCNQEMTKKN
ISKMIDTVYRHCGQKDTVIFCDRIMQLGFSHACRAGISFGKDDMVIPDTKVKIVGDTEAL
VKEYEQQYNDGLITQGEKYNKVVDAWGKATEKVAEEMMARIKAVEFDDSGRQKPMNSIYM
MSHSGARGSPNQMRQLGGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDCIVTHTDCGTDKGLTMTAIVDAGQVVASIGQRILGRTA
LDNIDNPVTGERIVDAGRMILEPDVVAIEKAGIQSVRIRSALTCEIQTGVCGVCYGRDLA
RGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHLGGTATVVDQSFLEASYEGTVQIKNRNM
LRNSDGVLVAMGRNMAIQILDERGVERSSQRVAYGSKIFVDDGDTVRRGQRFAEWDPYTR
PMMTEVEGTVHFEDVVDGISVLESTDESTGITKRQVIDWRSTPRGTDLKPAIVIKDKNGN
IAKLARGGEARFMLSVDAILSVEPGQKVSQGDVLARSPLESAKTKDITGGLPRVAELFEA
RRPKDHAIIAEIDGTIRFGRDYKNKRRVMIEPAEDGVEPVEYLIPKGKPFHLQDGDYIEK
GDYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVVINDKHIEVIVRQMLQKVEI
TDAGDSTYIVGDNVDRIELEDVNDSLIAEGKKPAFGDPVLLGITKASLQTPSFISAASFQ
ETTKVLTEAAVAGKTDNLQGLKENVIVGRLIPAGTGGTMTQIRRIATARDELILEERRKG
TGAESATPMLAAMANDPAAAE
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaggtcatgaatcttttcaatccgcaggtgcctgcacagaccttcgattcc
atccggatctcgattgcgtccccggagaagattctttcctggtcttacggtgagatcaag
aagccggagacgatcaactaccgcaccttcaagccggaacgcgacggtcttttctgcgcc
cgcatttttggtccgatcaaggactatgagtgcctgtgcggcaagtacaagcgcatgaag
tacaagggcatcatctgcgaaaagtgcggcgtcgaagtcacgctgtcgcgcgttcggcgc
gagcgcatgggccatatcgagctcgccgcgcccgttgctcacatctggttcctcaagtcg
ctgccgagccgcatctcgacgctgctcgacatgacgctcaaggatatcgagcgcgtcctc
tatttcgagaactacatcgtcaccgagccgggtctgacgtcgctcaaggaaaatcagctc
ctgagcgaagaagaatacatgatcgcggtcgacgagttcggtgaggaccagttcaccgcc
atgatcggcgccgaagcgatctacgagatgctcgcatcgatgaatctcgagaagatcgcg
ggcgacctgcgttctgaaatggctgagacgacgtctgatctgaagcagaagaagctgatg
aagcggctgaagatcgtcgagaacttcatggagtcgggcaatcgtccggaatggatgatc
atgaaggtcgttccggttattccgccggacctgcgtccgctcgttccgctcgacggcggc
cgtttcgccacgtcggatctcaacgatctctatcgccgcgtcatcaaccgtaacaaccgc
ctgaagcggctgatcgaactgcgtgcgccgggcatcatcatccgcaacgaaaagcggatg
ctgcaggaatcggtggatgcgctgttcgacaacggccgtcgcggtcgcgtcatcacgggt
gccaacaagcgtccgctgaagtcgctctccgacatgctcaagggcaagcaggggcgcttc
cgtcagaacctgctcggcaagcgcgtcgactattccggccgttcggtcatcgtgaccggg
ccggaactcaagctgcatcagtgcggcctgccgaagaaaatggcgctcgagctcttcaag
cccttcatctatgcgcgtctcgacgccaagggttattcctcgaccgtcaagcaggccaag
aagctggtcgaaaaggaaaagccggaagtctgggatatcctcgacgaggtcatccgcgag
catccggtccttctgaaccgcgcgccgaccctgcaccgcctgggcatccaggccttcgaa
ccgatcctggtcgaaggcaaggccattcagctgcacccgctcgtctgcacggccttcaac
gccgacttcgacggtgaccagatggccgttcacgtgccgctctcgcttgaagcgcagctc
gaagcacgcgtgctgatgatgtcgacgaacaacatcctgcatcctgcaaacggtgctccg
atcatcgtgccgtcgcaggacatggtgcttggtctctactacctctcgatcatgaaccag
aacgagccgggcgaaggcatggcgttttccgacatgggcgaactgcaccatgcgctggag
accaaggccgtaaccctgcatgccaagatccgcggccgctacaagaccgtcgacgccgaa
ggcaatccggtttcgaaaatctacgaaacgacgcctggccggatgatcatcggcgagctc
ctgccgaagaatccgaacgtccccttcgaaacctgcaaccaggaaatgaccaagaagaac
atctccaagatgatcgacacggtctatcgccattgcggtcagaaggacacggtcatcttc
tgcgacaggatcatgcagctcggcttctcgcatgcctgccgtgccggcatttcgttcggc
aaggacgacatggtgattccggacacgaaggtgaagatcgtcggcgataccgaagcgctc
gtgaaggaatacgagcagcagtacaatgacggcctcatcacccagggcgaaaagtacaac
aaggtggtcgacgcctggggcaaggcgaccgaaaaggtcgccgaagagatgatggcgcgc
atcaaggccgtcgaattcgacgacagcggccgccagaagccgatgaactcgatctatatg
atgtcccactcgggcgcccgtggttcgccgaaccagatgcgtcagctgggcggcatgcgc
ggcctcatggcgaagccgtcgggcgagatcatcgaaactccgatcatctcgaacttcaag
gaaggcctgaccgtgaacgagtacttcaactcgacgcacggtgcccgtaagggtctcgcc
gacaccgccttgaaaactgcgaactccggttacctgacccgtcgtctcgtcgacgtggcg
caggactgcatcgtcacgcacacggattgcggcaccgacaagggcctcaccatgactgcg
atcgtcgatgccggtcaggtcgttgcctccatcggccagcgtatccttggccgtacggcg
ctcgacaacatcgacaacccggtcaccggcgaacgcatcgtcgatgccggccggatgatc
ctcgagccggatgtcgttgcgatcgaaaaggctgggattcagtcggttcggattcggtcg
gcactgacctgcgaaatccagaccggtgtttgcggcgtctgctacggccgcgaccttgcg
cgcggtacgcccgtcaacatgggcgaggcagtcggcgtcatcgccgcccagtcgatcggc
gagccgggcacgcagcttaccatgcgtacgttccaccttggcggtacggcaaccgtggtc
gaccagtcgttcctggaagcctcctatgaaggcacggtccagatcaagaaccgcaacatg
ctgcgcaactccgatggcgtgctcgttgccatggggcgcaacatggcgatccagatcctc
gacgaacgcggtgtcgagcgctcctcgcagcgcgtcgcctatggctcgaagatcttcgtc
gacgatggcgacacggtgaggcgcggtcagcgtttcgccgagtgggatccctatacccgt
ccgatgatgacggaagtagaaggtaccgttcacttcgaagacgtggttgatggcatctcg
gttctggaatcgacggacgagtcgaccggcatcaccaagcgtcaggtcatcgactggcgt
tcgacgccgcgtggtaccgaccttaagcctgcgatcgtcatcaaggacaagaacggcaat
atcgccaagcttgcccgcggcggcgaagcccgcttcatgctctcggtcgacgcgatcctt
tccgtcgaaccggggcagaaggtgagccagggtgacgttcttgcccgttcgccgctcgaa
agcgccaagaccaaggacatcaccggtggtctgccgcgtgttgccgaattgttcgaggcg
cgccgtccgaaggatcacgccatcatcgcggagatcgatggtacgatccgtttcggccgc
gattacaagaacaagcgtcgcgtcatgatcgagccggcggaagatggtgtcgagccggtc
gaatacctgatcccgaagggcaagcccttccatcttcaggatggcgactacatcgaaaag
ggcgattacatcctcgatggtaacccggcaccgcatgacattctggcgatcaagggcgtg
gaagcacttgcttcctatctcgtgaacgagatccaggaagtctatcgactgcagggcgtt
gtcatcaacgacaagcacatcgaggtgatcgtccggcagatgctgcagaaggtggaaatc
accgacgccggtgactcgacctatatcgtcggcgacaatgtcgatcgcatcgagctggaa
gatgtcaatgacagcctgattgccgaaggcaagaagcccgcctttggcgatccggtcctg
ctcggcataaccaaggcatcgctgcagacgccgtccttcatctcggccgcttcgttccag
gagaccaccaaggtcctcaccgaagcagcggtcgcaggcaagacggacaacctgcagggt
ctcaaggagaacgtcatcgtcggtcgccttatcccggccggtaccggcggcacgatgact
cagatccgccgtatcgccacggcccgcgacgagttgatcctcgaagagcgccgcaaggga
acgggtgcggaaagcgccacgcccatgctcgcggcaatggcaaacgaccccgctgccgcg
gagtaa
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integrated database retrieval system
