Sinorhizobium medicae: Smed_2888
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Entry
Smed_2888 CDS
T00555
Name
(GenBank) protein of unknown function DUF490
KO
K09800
translocation and assembly module TamB
Organism
smd
Sinorhizobium medicae
Brite
KEGG Orthology (KO) [BR:
smd00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
smd02000
]
Smed_2888
Transporters [BR:
smd02000
]
Other transporters
Pores ion channels [TC:
1
]
Smed_2888
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TamB
T2SSN
Motif
Other DBs
NCBI-ProteinID:
ABR61718
UniProt:
A6UDI8
LinkDB
All DBs
Position
3025440..3031049
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AA seq
1869 aa
AA seq
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MNQVTRFLRSALRYFFAALGTLVVVLLLLVAFLGFTVPGARVVAWAIEKYAATPDQIVRI
SEPGALLTGDFTAGTITLFDGKGIYAEVRDLSVDWSPAELLSLRFDASRITAGSIRVERL
PVPSTETRKVRSTFALPVDVKIDAFDLKEVVLGKQIAGEDHFLTAQGELNATNSSVALVL
DAAERDRPDARATADLVFNPAGNQLKLEAELTEPKRGLLARLLRLPGEPAVNMTVTGQGP
LSDWTGSGTVSLDGSEILRLDGRHVLAAEETHQLTVSGGGAFATLMPPAFRPLFEGTSRI
DLRAAFDGRSMVRIETGKVSTGALTLDISGTVDSRGENNLKASLTGTSGPFDFRWPLKDG
ELQALIDTANVSLIGDGQSAILDIAADISSVNLPQARLGGIRLSAQSDAFNLETRSGPLK
TTVEIAESRFANADLDRAVQAPVKLDGTIAIAPEDIRFDPLTIESASIGGTVSGSFDRAE
TTLEAAFKVFAVREVLPPALVEKFDRTIALSGNAVVEQDGSVRLSGLDVKSGAVDASGTV
ALAGSILTADIEGTLPDLGRLLADAQGSAAFHALASGPLDKLGIEAEITSNGATLAGRTL
DDLVVNADATIMPESPEAKLTATGTLDGQAIDLRADVVSRDGRTSIPTLEAKVGENRLTG
AIDLTSDFKPNGQIDFNLPDFGLIAAMAGQQASGDLAGSATIRTEEGVTSLALTARGESI
KRDALTVAAPVVDVNVSDIAKLAIKGGIKAESAAQGENRLTDIDIAFEQQADRTGFSINA
EYDGAPLAATGDLASLDGRTEIRLASASAVVKRIPLQLARPSVVAVENGVVRIDGLTIQA
STGTVSVTGTAGEALEISADINGLPATLINSFAPTLGAEGSIGGKVDVAGDAGTPVVRYD
LTWSGASIASVRSAGVEAEDLSAKGTVTVAEDSIRLDPLAIERAGFRGDMTASLDRADMT
AEADFQFVAEPVVLPAGIGAKFDAPVNVSGKVATGAGGRIELSALEVRSGTVNATGSAAL
AEGALTAEIEGALPDLGKLLADAKGRAIFTADVSGPLDALGVKAEVTSSGAALAGRTLSD
FVITADATARPGSPQAKLTATGALDGQPIDVKAEVVSKDGQTSIPTLEAKIGDNRLTGRI
DLATGFKPEGTIDFNLPDLGLLAAMAGERVSGDLSGSASIRTADGVTSVSLKASGSGIKR
GDLTIAKPVADISIADVAALAIRGSVKAESLAQGQNRVTGLNLTFNQQGGRTGFAIDGRY
DGGPLSARGDMTASGGRTEIRLASFAASPKRIPLKLARPTIVAIDNGTVLLDALTIEASK
GTVTVAGSAGQTLDISAKLNALPAALINTFAPTLGAEGTIAGTVDLDGTAAAPVVVYDLR
WSGASVAAARGAGVSSLDVAAKGRFADNRVTVDATVSGPGNLSFRGGGNVDLGGNMPISM
KFAGDVPFALLANIMAQQGFTLTGSARVDLALSGSARAPQIAGTVSTSGARLVDVRRNLA
LNDLTANVALDGRQATISRLSANLASGGSVAASGTIGIVPGSGFPADLRIRLNDATYVDG
TLFTANLAGDLTLNGPLVSSPVLGGRLTIRRAAITIPERLPASLSEIDIKHRNAPASVRQ
MTKDLRRDTSAGTEASGAIAFDLAVNSPGQFFVRGRGIDAELGGDLTIRGTAVQPIVSGG
FDMRRGRLEILGKRLTFTDGHIGFGGDLIPTLNLDATSSAGSTTITVNVAGPANNPRVTF
SSSPALPQDEILAQLIFNRSLNNLSAFQIAQLASAVGQLAGGGSTSLLDGLRNKLGVDDL
DVTTDESGGAQVRAGKYLNDRTYLELQQGSDSASSKAIINLDIGRGVKLKGEAAGDGSAA
GGIFFEREY
NT seq
5610 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaggtcacccgcttccttcgatctgcgctgcggtacttctttgccgccctcggc
accctcgtggtcgttctcctcctgctcgtggcgtttctgggcttcacggtacccggcgcc
cgcgtcgtcgcctgggcgatcgagaaatacgcggcaacccccgaccagatcgtgcgcatc
tccgagccgggcgccctcctgaccggcgatttcaccgccggcaccattacgctcttcgat
ggcaaaggcatttatgcggaggtccgcgacctctcggtggactggtcgcctgccgagctt
ctctcacttcgcttcgacgcgagcaggattacggctggttcgatccgagtagagcggctg
ccggtcccctcgaccgagaccaggaaggtccgttcgaccttcgcccttccggtcgacgtg
aaaatcgacgccttcgatctcaaggaagtcgtcctcggcaagcagatcgccggcgaggac
catttcctgacggcccagggcgagctgaacgcgacgaattccagtgtcgctctcgtgctc
gatgccgccgaacgggaccgcccggatgcgcgagcaaccgccgatctcgtcttcaatccg
gccggcaaccagctgaaactcgaagcggaactgacggagccgaagcgcggccttctggcg
aggctgctgcgcctccccggagaacctgccgtcaacatgaccgtgaccggacaggggccg
ctttccgattggacgggctcaggcacggtttcgctcgacggaagcgagatccttcgcctt
gacggccggcacgtgctcgccgccgaggagacgcaccagctgacggtttccggcggcggc
gccttcgccacgctgatgccgcccgcgttcaggccgctcttcgaggggactagcagaatc
gacctaagggcggcgttcgatggcagaagcatggtccggatcgaaacgggcaaggtctcg
accggcgctctgacgctcgacatttccggtaccgtcgacagccgaggcgaaaacaatctc
aaggcaagtctcaccggcaccagcggcccgttcgatttccgctggccgttgaaggatggc
gagttgcaggcgcttatcgatacggcaaacgtgtcgctgatcggcgacggacaatccgcc
atcctcgacatcgcagccgacatatcctccgtgaacctgccgcaggcccgcctcggcggc
atccggctttcggcccagagcgacgccttcaatctggaaacccggtcgggccccttgaag
acgaccgtagagatcgccgagagccgcttcgcaaatgccgatctcgaccgggccgtacag
gcaccggtcaagctggacggcactattgccatcgctccggaagacatccgtttcgatccg
ctgacgatcgagagcgcaagcattggcggcacggtctccggcagtttcgatcgcgccgag
acaacgcttgaggcggcgttcaaggtcttcgccgtgagagaggtactgcccccggcgctt
gtcgaaaaattcgacaggacgatcgctctctccggcaacgcagtcgtggagcaggacggc
agcgtccggttgagcggactggacgtcaaatccggtgcggtcgacgcctctggcaccgtt
gcacttgcggggagcatattgactgcggacatcgagggaacgcttcccgatctcggacgg
cttctcgccgatgcgcagggctcggccgccttccatgcgctcgcatccggcccgctcgac
aagctcggcatcgaagcggagataacctccaacggtgcgacgcttgccggccgcacgctg
gacgatctcgtcgtcaatgccgatgcgaccatcatgccggaaagtcccgaagcgaagctg
acggcaaccggcaccctcgacggtcaggcaatcgaccttcgcgccgacgtggtatccagg
gatggccgcacctcgatccccactctcgaagccaaggtcggcgaaaaccggctgaccggg
gcgattgacctgacctccgacttcaagccgaacggacaaatcgacttcaacctgcccgat
ttcggcctcatcgccgccatggccgggcagcaggcatccggcgatctcgccggatccgcg
acgatccggaccgaagagggcgttacgtcgctcgcgctgacagctcgcggcgagagcatc
aagcgcgacgcattgacggttgccgcgcccgtggtcgacgtcaacgtctccgatattgca
aaactggcgatcaagggcggcatcaaggccgagagcgccgcacagggcgagaatcgcctg
acggacatcgacatcgctttcgagcagcaggcagaccgaacgggcttctcgatcaatgcg
gagtatgacggcgcgccgctggcagcgaccggtgatctggcgagccttgacggcagaacc
gagatccgcctcgcatcggcctcggctgtagtcaagcgcattccactgcagcttgccaga
cccagcgtcgtcgcggtcgaaaacggtgtcgtgcgtatcgacgggctgacgatccaggcc
tcgacgggtacggtctccgtcaccggcaccgccggcgaagccttggagatctcggctgac
atcaacggcctgcccgccaccctgatcaacagcttcgcaccgacgctcggggccgagggc
tcgattggaggcaaggtcgacgtcgccggcgacgccgggacaccggtcgtgcgctacgac
ctcacctggagcggcgcttcgatcgcctccgtgcggtcggccggcgtagaggcagaggac
ctgtccgcgaaggggaccgtgacggtcgccgaggacagcatccgcctcgatcccctggcc
atcgaacgcgcgggttttcgcggcgatatgacggcaagcctcgaccgcgccgacatgacg
gccgaagcggatttccagttcgttgccgaacccgtcgttctcccggccggcatcggcgcg
aagttcgatgcgccggtcaacgtctcgggcaaggtcgcgacaggggccggcgggaggatc
gaactgagcgcgctcgaggtcagatccggtaccgtcaacgccaccggctccgccgcactc
gccgaaggcgcactgacggcggagatcgagggcgcattgccggacctcggcaaactgctc
gccgacgccaaaggcagagccatctttaccgccgacgtctccgggccgctcgatgcgctc
ggcgtcaaggcggaagtgacctccagcggcgcggctctcgccgggcgaacgctctcggat
ttcgtgatcacggccgacgcgaccgccagacctggcagcccgcaggcaaagctgacagcg
acgggagccctcgacggtcagccgatcgacgtcaaggccgaagtggtttcgaaagacggc
caaacctcgattccgaccctggaggcgaagatcggcgataaccggttgacgggccggatc
gacctggcgacaggcttcaagccggagggtacgatcgacttcaacctccccgatctcggc
ctgctagccgccatggccggcgagagggtttccggagatctttccggctccgcatctatc
agaacggcggacggtgtaacttcggtatcgctgaaggcgagcggcagcggcatcaaacgc
ggtgatcttacgatcgcaaagccggttgccgatatcagcatcgccgatgtggcggcactc
gcgatacggggaagcgtcaaggcggaaagcttggcccagggtcagaatcgcgtcaccggg
ctcaatctcaccttcaatcagcaggggggcagaaccggctttgccatcgacggcagatat
gatggcggacctctctcggcgagaggcgacatgacggcaagcggcggacgcaccgaaatc
cggctggcttcattcgcggcaagtccgaagcgaataccgttgaaacttgcgcgtcctacc
atcgtcgccatcgacaacggcacagtgcttctcgatgccctgaccatcgaggcatcgaag
ggaaccgtcacggtggccggctcagcgggacagacgctcgacatctcggccaaactcaac
gcgctgccagccgcgctgatcaacaccttcgccccgacgctcggagcggaaggcacgatc
gccggtacggtggacctggacggaacggcggcggctccggtcgtcgtctacgacctgaga
tggagcggcgcctcggttgccgcggcacgtggcgccggcgtgtcctcgctggacgttgcg
gcaaagggccgcttcgcagacaaccgggtgaccgtcgatgccactgtctccggtccggga
aatctctccttccgaggcggcggcaatgtcgatctcggcggcaacatgcctatctcgatg
aagttcgccggcgacgtgccgttcgctctgcttgccaatatcatggcgcagcagggcttt
accctgaccgggtcggcccgggtcgatctggcgctctccggctcggcaagggcgccgcag
attgccggcaccgtctctacttctggcgcccggctggtggacgttcgccgcaatctcgcg
ctcaacgacctaacggccaatgtcgcgctcgacggaagacaggcgacgatctcgcgcctc
tcggccaatctcgccagcggcggatcggtcgcggcgagcggaaccattggcatcgtcccc
ggctccggcttccccgcagacctcagaatccggctcaacgacgctacttatgtcgacggc
acgctgtttaccgcaaacctggccggcgacctgacgctcaacggcccgctcgtctcgtcg
cccgtgcttggtggaagattgacgatccgcagggccgcgatcaccataccggagaggctg
ccggcctcgctctcggaaatcgacatcaagcatcgcaacgccccggctagcgttcggcag
atgacgaaagacctgcgccgggatacgtccgcaggcaccgaggcgagcggcgccatcgcc
ttcgatctcgcggtcaattcaccgggccagtttttcgtacgcgggcgcggcatcgatgcc
gaactcggcggcgatctgacgatccgcggcactgccgtccagccgatcgtttccggcgga
ttcgacatgcgccgcgggcgccttgagattctcggcaaacgcctgacctttaccgacggt
cacatcggcttcggcggagacctcattcccacgcttaatctcgacgccacgtcgagcgcc
ggctcgacgacgattaccgtcaacgtcgccggtcctgcaaacaacccgagggtgaccttc
tcctcgtctcctgcgcttccgcaggatgagatcctggcgcagctcatcttcaaccggtcg
ctcaacaatctctccgccttccagatcgcacagctcgcttcggccgtgggccagcttgcc
ggcggcggctccacgtcgctgctcgacgggctgcgcaacaagctcggcgtcgacgatctc
gacgtcacgaccgacgagagcggcggcgctcaggtacgcgccggaaaatatctgaacgac
cggacctatctcgaattgcagcagggttccgactcggcctccagcaaagcgatcatcaat
ctcgatatcggccggggcgtgaaactgaagggcgaagcagccggggacggctcggccgcc
ggtggcatattcttcgaaagggaatattga
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