Sinorhizobium medicae: Smed_3242
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Entry
Smed_3242 CDS
T00555
Name
(GenBank) Double-strand break repair helicase AddA
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
smd
Sinorhizobium medicae
Brite
KEGG Orthology (KO) [BR:
smd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smd03400
]
Smed_3242
Enzymes [BR:
smd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Smed_3242
DNA repair and recombination proteins [BR:
smd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
Smed_3242
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
NPHP3_N
Astro_VPg
DEAD
Motif
Other DBs
NCBI-ProteinID:
ABR62066
UniProt:
A6UEI6
LinkDB
All DBs
Position
complement(3416868..3420437)
Genome browser
AA seq
1189 aa
AA seq
DB search
MRSDATGPEERTPEGWLDWTTERQALASDPARSAWVSANAGSGKTHVLTQRVIRLLLAGC
RPSAILCLTYTKAAASEMSNRVFEKLAEWATLDDAALEKRIEAIEGKRPATGKIQEARRL
FARALETPGGLKIQTIHAFCEALLHQFPLEANVAGHFSVLDDRAAAVLLADARRALLTAT
AAANDRELAAAFATVLELADDTGLEKLLAAIVANRAQIQAFLDRVSGRGGLDTHLRAALD
LNPGDTPEAIMAAAWPLAGLNGAALVDYIGLASRLGGTKPTAIAEGFRTVRAIGDPAARY
DRLLETFLNGGGKPKADSAFLNAAMRREAPHLESLIEEARSHLLACVDRLSIVRMYEATR
AALVLAERLNRDYESLKKARSQLDFEDLINRTAALLARSDVGAWVHYKLDQGIDHILVDE
AQDTSPAQWTIIQSLAADFFAGDTARADDRTIFAVGDEKQSIYSFQGARPERFSRERTLT
ERRVRAGNKRFSPIRLQLSFRSTVDVLSAVDTVFANIGNARGLSARDEAIVHASNRIGQP
GAVDLWEVIAPEPAASDEDWTAPFDATPERAPVNILARRIAAVLEDWIGKETVIEKGVRR
AMRPGDVIVLVRKRDAFVNALMRALKRRGNIPVAGADRLVLTSHIAVQDLIALGRFVLLP
EDDLSLAALFKSPLVNLCEDDVFELAARRNEGESLWHRLQQAGVEETSRYNATVRKLAAF
STLSRELSPHDFYARILGAHGGRRAFLARLGSEVSDILDEFLTFALDHERSGLPGLQAFI
STLEIEAPTVKREQDKERDEVRVMTVHAAKGLEAPVVFLVDGGGEAFVRQQVSDLRFLEK
PQADQTLLTVPVWRAPGSAPNSLIADDNERLKMLAEEEYRRLLYVGMTRAADRLIVCGYR
GQRQNVDTWHSMVQGTLAQDLMGRATPRLFRAAGEEWQGLAWRETHVPRDLPAADGASGE
PEQAKAGLPRALFTAPPPPRRLPRPLAPSGTAIAIDEPDGSSIVGSALFTGKNAPKFSML
RGAILHRLLQVLPSIDAVERTAAAERYLARSVPRWPEAERLALAATVMDVLGHAELQPLF
GEHSRAEVSVMGTLKLGPREFAVSGRIDRLAVSGDTVTIADYKTNREIPASAEDIAPVYR
NQLAIYRELLKPLYPGKRFRCVLIFTEGPAIRVLSEAMLDRSLEALATK
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atgaggagtgatgcgaccggaccggaggagagaaccccggaaggatggctcgactggacg
acggaacggcaggcgctcgcctccgatcccgcgcgctccgcttgggtttcagccaatgcg
ggctccggcaagacccatgtgctcacgcaacgcgtcatccggctgctgctcgcgggttgc
cggccatctgccatcctatgcctgacctatacgaaggcagccgcctccgagatgtccaac
cgtgtgttcgagaagctcgccgaatgggcgaccctcgacgatgctgcgctcgaaaaacgg
atcgaggcgatcgaaggcaagcgaccggccaccggcaagatccaggaggcgcgccggttg
tttgcgcgggccctggaaacgccgggcggcctgaagatccagaccattcatgccttttgc
gaggccctcctgcaccagttcccgctggaggccaatgtcgccgggcatttttccgttctc
gacgatcgagccgccgcggtcctgcttgccgatgcgcgcagggctctcctaaccgccacg
gcggcggcaaacgacagggagttggcggcggccttcgcaacggtcctcgaactcgcggac
gacaccgggctcgaaaagctgctcgcggcgatcgtcgccaatcgggcgcagatccaggcc
tttctggaccgcgtctcgggtcgcggcggcctggacacgcatctgcgcgcggccctcgac
ctcaaccccggcgatacgcccgaggccatcatggccgcagcctggccgctcgcaggcctc
aatggcgccgccctagtcgactatatcggtcttgcgtcacgccttggcggcaccaaacct
acggccatcgcagaaggctttcggaccgtccgtgccatcggggatccggcggcacgctac
gaccgcctgcttgaaaccttcctcaatggcggtggcaagccgaaggcggattcggccttt
ctgaacgcagccatgcgtcgtgaagcaccgcatctcgagagccttatcgaagaggcacgc
agccatctgcttgcctgcgtggaccgtctgagcatcgtcagaatgtatgaggcgacccgc
gccgccctcgtcctcgccgaaaggctcaaccgcgactacgagtcgctcaagaaggcgcgc
agccagctcgatttcgaagacctgatcaaccgcacggcggcattgcttgcgagaagcgac
gtcggagcctgggtacactacaagctggatcagggaatagaccacatcctcgtcgacgaa
gcacaggatacgagcccggcgcaatggacgatcatccagtcgctggcggcggatttcttc
gccggcgatacggcgcgtgcggacgaccgcacgatttttgcagtcggcgacgagaagcag
tctatctattctttccagggcgcgcggccggaacgcttctcgcgcgagcgtacgctgacc
gagcgacgggtgcgcgcgggcaacaagcgcttcagcccgatccgcctgcagctttccttc
cgctcgacggttgacgtgctctccgccgtcgacaccgtgtttgcaaacatcggaaatgcg
agaggcctgagcgccagggatgaggcgatcgttcatgcctcgaaccggatcgggcaaccc
ggcgccgtcgacctctgggaggtgatcgcgcccgagccggcggcttcggacgaggactgg
accgctccatttgacgccacccccgagcgcgcgccggtgaacatccttgcccggcgcatt
gcagccgtcctcgaagattggatcggcaaggagaccgtgatcgagaaaggcgtgcgccga
gccatgcggccgggtgacgtcatcgtgctggtccgcaagcgcgatgccttcgtcaatgcg
ctgatgcgcgcgctcaagcggcggggcaatattccggtcgccggtgcggaccggctggtt
ctgacgagccatatcgccgtgcaggacctgatcgcgctcggccggttcgtgcttctgccc
gaggatgatctgtcattggcggcactcttcaaaagcccgctcgtcaatctttgcgaagac
gatgtcttcgaactcgccgcgcgcaggaacgaaggcgaaagtctctggcaccggctgcag
caggcgggcgtggaggagacgagccgttacaatgcaacggtgcggaagcttgccgccttt
tccaccctttcgcgggagctatcgccgcacgatttctatgcccgcattctcggcgcccat
ggcggccggcgtgccttcctggcgcggctcggcagcgaggtcagcgatatcctggacgag
ttcctgaccttcgcccttgatcacgaaaggagcggcctgcctggcctgcaggcttttatc
tcgacgctggagatcgaagcgccgacggtcaagcgcgagcaggacaaggaacgcgacgag
gtgcgcgtcatgacggtgcatgccgcaaagggcctggaggcaccggtcgtcttcctcgtc
gatggcggcggagaagccttcgtccgccagcaggtttcggacttgcgcttcctggagaaa
ccgcaagccgatcaaaccctgctcaccgttccggtctggcgtgcgccgggctcggcgccg
aactcgctcatcgccgacgataacgagcgactgaagatgcttgcggaggaggaatatagg
cgcctcctctatgtcggcatgacgcgcgcagccgaccgcctgatcgtctgcggctatcgc
ggccagcggcagaatgtcgatacctggcattcgatggtacagggaacgctggcgcaggac
ctcatgggccgcgcgacgccgaggcttttccgcgccgcaggtgaggaatggcagggcctt
gcctggcgcgagacgcatgtgccgcgcgaccttccggcagccgacggcgcctctggagag
cctgaacaggccaaagccggtctgccgagggcgctgttcacggcgccgccccccccgcgg
cggcttccgcgaccgcttgccccatccggtacggccatcgcgattgacgagccggacggc
tcgtcaatcgtcggctcggcgctcttcaccggcaagaacgcgccgaagttctcaatgctg
cgcggtgcgatcctgcaccggctgttgcaggtgcttccctccatcgatgccgtggaacgt
acggccgcggctgagcgctacctcgcccgttccgtgccgcgatggcccgaggcggaacgg
cttgcactcgccgccaccgttatggacgtgctcggccatgcggagctgcagccgctcttc
ggtgaacacagccgggcagaggtttccgtgatggggacgctgaaactcgggccccgcgaa
tttgccgtatcgggccggatcgaccgcctggccgtctccggcgacactgtgacgatcgcc
gactacaagaccaatcgcgagattcccgcctcggccgaagacatagcgccggtctacagg
aaccagcttgcgatctatcgcgaactcttgaaaccactttatcccggcaagcgtttccga
tgcgtgctgatcttcacggaaggtccggcgatccgggttctttccgaggcgatgctggac
aggagtcttgaagcgctcgcgacaaagtga
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