Sinorhizobium medicae: Smed_3243
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Entry
Smed_3243 CDS
T00555
Name
(GenBank) Double-strand break repair protein AddB
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
smd
Sinorhizobium medicae
Brite
KEGG Orthology (KO) [BR:
smd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smd03400
]
Smed_3243
Enzymes [BR:
smd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Smed_3243
DNA repair and recombination proteins [BR:
smd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
Smed_3243
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
Histidinol_dh
Motif
Other DBs
NCBI-ProteinID:
ABR62067
UniProt:
A6UEI7
LinkDB
All DBs
Position
complement(3420427..3423606)
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AA seq
1059 aa
AA seq
DB search
MSGHPNVFTIPAGLPFLRTLAEKLCDGKLTAGFRYDPTEPLALAGVTIFVPTRRSARVLR
SEFVDLLGGRSAILPVIRALGETDDDSGFFDTQLPAILDLAPPLSGTARLIELGRLILAW
RNRLPQVVLDIHAESPLIAPASPADAIWLARNLAELIDAIETEELDWDALDGLDGGEHAL
WWQLTLAFLKIARTYWPERLAELKHSSPARHRNAVLKAETQRIAAGKVTGPIIIAGSTGS
IPATAALIAAVKALPHGTIVLPGLDGTMSNAEWQLIAGEADGAGAFSRNPASRTHPQYGF
HRLLRRMGIERDDVPALASAPDDLDCRSAVLSRALLPADATNVWMQARLSFEPGRLFSAF
AGVALIEAANEREEATAIAIALRLALEGDEESQAALITPDRDLARRVGAELARFGIEADD
SAGIPLSATAAGTLARLMLEATLRPDDPVALVALLKHPLARFGGSAKDARRAADVLELVA
LRGGTDVVDISALEPVLDKALAKHQAERHPPPWRNGIGLDDIALARALARRIATAVEPLA
STLSADAEIGRHRSTVLSLSDWAERTGRALEAVAVDERGSLGDLWASEAGETLSTLLRGI
METDGQMESDGAQWCDILEALAASEAVKPRSMRHPRVFIFGALESRLQSVDLVVLGGMNE
GTWPRQTSNDPFLSRTMKAGIGLEPPERRIGQLAHDFQMACGTRKLIFSRSMRQGSAPTV
ASRWLQRLQALGGERLTKQLRANGANYLHWMRILDYGERQPLSERPEPKPPAELQPRKYS
FSEITRLRRDPYAVYARRILRLEPIDPFNRDPGAAERGQLYHRIVERFVKGGFDPASREG
EEAMIRLTDEAFDEEKLPAHIDTIWRPRFQAVGRAFLGWERERRRGVSRSFTEVPAAMDL
GTADIRLTGIADRLDRLTDGTIDIIDYKTGSSPSPKEARALLDPQLALEAAALRAGAFHT
VGAARPHSLRYVRLKPGARFAVDTVNNEGARSKETKSTEQLADEALAELRKLLAALVSGR
HGFASRLIVQKQRDYGGEYDHLARVAEWATADGEDDDEE
NT seq
3180 nt
NT seq
+upstream
nt +downstream
nt
gtgtccggacatccgaacgtcttcacgattcccgctggcctgccctttctgaggacgctg
gcggaaaagctatgcgacggcaaactgacggccggcttccgctacgatccaaccgagccg
ctggcgctcgccggcgtcacgattttcgtgccgacccggcgctccgcccgggtgctgcgc
tcggaattcgtcgacctgctcggcggccgttcggcgatcctcccggtgatccgcgcgctc
ggtgagaccgatgacgacagcggcttcttcgacacgcaattgccggcgattctcgacctt
gcgccgccgctttccggaacggccaggctcatagagctcggccgcctcattctcgcctgg
cgcaaccgtctgccgcaggtggtcctcgacattcatgccgaaagtccgctgatcgcaccg
gcgagccccgccgacgctatctggctcgcgcgaaacctagccgaactcatcgacgcgatc
gagacagaggaactcgattgggatgcgcttgacgggctcgatggcggcgaacatgcgctc
tggtggcaactgacgctcgccttcctcaagatagcccggacctattggccggagcggctg
gcggagctcaagcactcctcgcccgcgcgccaccgcaatgccgtgctgaaggccgaaacc
cagcgcatcgctgccggaaaagtgaccggacctatcatcatcgccggctcgaccggctcg
atcccggcaacggccgccctgatcgctgcggtgaaggctttgccgcacggtacgatcgtg
cttccagggctcgacgggacgatgagcaatgcggagtggcagctgattgccggcgaggcg
gacggcgctggagccttctcaaggaacccggcaagccgtacccatccgcagtatggattc
caccgcctgctaaggcgcatgggtatcgaacgcgacgatgtgcctgccctcgcctccgct
cccgacgacctcgattgccggagcgcagtcctgtcgcgggcgctgttgccggccgacgcg
acgaacgtctggatgcaggcacgcctgagtttcgagccggggcggctcttctccgccttt
gcgggcgtggcgctgatcgaggcggcgaacgaacgcgaagaggcaaccgccatcgcgatt
gcgctccgcctcgccctcgagggcgacgaggagagccaggcggcgctcatcacgcccgat
cgcgaccttgcgcgtcgcgtcggtgccgagctcgcccgcttcggtatagaggcggacgat
tccgccggaattccgctctccgcgacggctgcgggtacgcttgcccggctgatgctggaa
gcgacgctcaggccggatgatcccgttgctctggtggcacttctcaagcatccgctggct
cgcttcggcggctccgcgaaagatgcgcgccgcgctgcggacgtattggagcttgtcgcc
ctgcgcggcggcacggacgtggtcgacatatcggccttggaaccggtcctcgacaaggcg
cttgccaagcatcaggccgagcgccacccgccgccctggagaaacggtatcggcctggac
gacattgcgctggcacgggcgctcgcccgccggatagcgacggccgtcgaacctctggcc
agtaccctctctgccgacgcggagatcggccgtcatcgctcgaccgttctttcgctttcc
gattgggccgagcgcacggggcgagcattggaagccgtcgccgtcgacgagcggggcagc
ctcggcgatctttgggcatcggaagccggcgaaacattgtcgacgctgctcagaggcatc
atggaaaccgacggccagatggagtccgatggggcgcaatggtgcgatattctcgaggcg
cttgccgcaagcgaagcggtcaagccgcgatccatgcgccacccccgcgtgttcattttc
ggcgcactcgaatcgcgcctgcaaagcgtggacctcgtcgtgcttggcgggatgaacgag
gggacctggccccgacagacatcgaacgatccgtttctttcaaggacgatgaaggcgggc
atcggactggagccgccggagcggcgtatcggtcagctcgcgcatgatttccagatggcg
tgcgggacgcgcaagctgatcttctcgcgttccatgcgtcaaggctcggcgccgacggtg
gcgtccagatggctgcaacgcctgcaggcgctcggcggcgagaggctgacgaagcagtta
agggccaatggcgcgaactatcttcactggatgcgcattctcgactacggcgagcgtcag
ccactgtcggagcgtccggagccgaagcccccggcggaactgcagccgcgcaaatattct
ttcagcgaaataacgcgccttcgccgcgacccctacgccgtctacgcgcggcggatcctg
cggctggagccgatcgatcccttcaaccgcgatcccggtgcggccgaacgcggccagctc
tatcaccggatcgtcgaacgctttgtgaagggcggcttcgaccctgcatcgcgggagggc
gaggaggcgatgatccggctcaccgacgaggccttcgacgaggagaaactacctgcgcat
atcgacacaatctggcggccgcgcttccaggcggtcggaagggcgtttctcggctgggaa
cgggagcgccggcgcggcgtttcacgatccttcaccgaggtcccggcagctatggatctc
ggcaccgccgacatccggctgaccggcatcgccgaccggctggatcggcttacggatgga
acgatcgacatcatcgactacaaaaccggatcgagcccctcgccgaaggaggcgcgggct
cttttagacccgcaacttgccctcgaggcggcggcgctcagggccggggcattccatacg
gtgggcgcggccaggccgcattcgctgcgctacgttcgattgaagccgggcgcccgcttc
gccgtcgacaccgtcaacaatgaaggcgcccgctcgaaggagacgaaatccaccgaacaa
ttggcggacgaggcactcgccgaactcaggaagctgctcgctgccctcgtcagcggcaga
cacggcttcgcctcgcggctgatcgtccaaaagcagcgcgattacggcggggaatacgat
catctggcacgcgtcgccgaatgggcaaccgcggatggcgaggacgatgatgaggagtga
DBGET
integrated database retrieval system
