Sinorhizobium medicae: Smed_3439
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Entry
Smed_3439 CDS
T00555
Name
(GenBank) NusA antitermination factor
KO
K02600
transcription termination/antitermination protein NusA
Organism
smd
Sinorhizobium medicae
Brite
KEGG Orthology (KO) [BR:
smd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smd03021
]
Smed_3439
03009 Ribosome biogenesis [BR:
smd03009
]
Smed_3439
Transcription machinery [BR:
smd03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
Smed_3439
Ribosome biogenesis [BR:
smd03009
]
Prokaryotic type
rRNA transcription factors
Smed_3439
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NusA_N
KH_5
HHH_5
S1
KH_2
KH_NusA_C
KH_1
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
ABR62257
UniProt:
A6UF27
LinkDB
All DBs
Position
3644337..3645995
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AA seq
552 aa
AA seq
DB search
MRLQQTETRDMAVSANRLELLQIADAVAREKVIDREIVLAAMADAIQKAARSRYGSESNI
RADINPKTGEIRLQRLLEVVEKAEDYSTQIPIELARDRNPDAKLGDFIADPLPPMDFGRI
AAQSAKQVIVQKVREAERDRQYDEFKDRVGEIVNGTVKRVEYGNVIVDLGRGEGIIRRDE
MIPRENMRYGDRVRAFVYDVRREQRGPQIFLSRTHPQFMVKLFTMEVPEIYDGVIQIKSV
ARDPGSRAKIAVVSNDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSPDPASFIVN
ALQPAEVAKVVLDEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESE
RRQKEFNERTQLFMEALDVDEMVGQVLASEGFAQVEELAYVDLDEIASIEGFDEETSNEI
QTRAREYLEKIEAEMDAKRKELGVADELRTINGLNSQMLVALGEEGIKTIEDFAGCAADD
LVGWVERKDGETKRFEGTFSKLEVTREEAEAMIVQARLAAGWITEEDLAKQQEEEPEQDE
TIEVAEGADQDA
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atgcgcctgcaacagacggagacaagagacatggcagtcagtgctaaccggctcgaactt
ctgcagatcgcagatgctgtggcacgcgaaaaggtgatcgaccgcgagatcgttctggcc
gcgatggcggatgcgatccagaaggcggctcgttcgcgctacggttcggaatcgaacatc
cgcgccgacatcaatccgaagaccggggaaatccgtctccagcgcctcctggaagtggtc
gaaaaggcggaagactattcgactcagattccgatcgaactcgcccgcgatcgcaatccc
gatgcaaagctcggcgatttcatcgccgatccgctcccgcccatggattttggccgcatc
gccgctcagtcggccaagcaggttatcgtgcagaaggtgcgcgaagccgagcgcgaccgc
cagtacgacgagttcaaggaccgtgtcggcgagatcgtcaacggcaccgtcaagcgcgtc
gaatatggcaatgtcatcgtcgatctcgggcgcggtgaaggcatcatccggcgcgacgag
atgatcccgcgcgaaaacatgcgttacggcgaccgcgtccgtgcctttgtctacgacgtg
cgccgcgagcaacgcggaccgcagatattcctgtcgcgcacccatccgcagttcatggtg
aagctcttcaccatggaggtaccggaaatctacgacggcgtcatccagatcaagtcggtt
gcccgcgatccgggctcgcgcgccaagatcgccgtcgtctcgaacgattcgtcgatcgat
ccggtcggcgcctgcgtcggcatgcgcggctcgcgcgtgcaggctgtcgtcggtgaactc
cagggcgaaaagatcgatatcatcccgtggtcgccggatccggcttccttcatcgtcaat
gcgctgcagccggcggaagtggcgaaggtcgttctagacgaggatgcggagcgtatcgaa
gtcgtggttccggacgagcagctttcgctcgccatcggccgccgcggccagaacgtccgt
ctcgcctcgcagctgaccggatgggatatcgatatcctcaccgaacaggaggagagcgag
cgccgtcagaaggaattcaacgagcgcacacagctcttcatggaagccctggacgtcgac
gagatggtaggccaggtgctcgcctccgaaggctttgcccaggtggaagagctcgcttat
gtcgatctcgacgaaattgcctccatcgagggcttcgacgaggaaacgtcgaacgagatc
cagacccgcgcccgcgaatatctcgaaaagatcgaggcggaaatggacgccaagcgcaag
gaactcggtgttgccgacgagctgcgcacgatcaatgggctcaacagccagatgctggtc
gctctcggcgaggaaggcatcaagacgatagaggactttgccggctgcgccgccgacgac
ctcgtaggctgggtcgaacgcaaggatggtgagaccaagcgcttcgagggaacgttctcg
aagctcgaggttacccgggaagaggccgaagcgatgatcgtgcaggctcgtctcgctgcc
ggctggatcaccgaagaggatctggccaaacaacaggaggaagagccggaacaggatgag
acgatcgaagtcgccgaaggcgcggatcaggacgcctga
DBGET
integrated database retrieval system