Sinorhizobium medicae: Smed_3443
Help
Entry
Smed_3443 CDS
T00555
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
smd
Sinorhizobium medicae
Brite
KEGG Orthology (KO) [BR:
smd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
smd03016
]
Smed_3443
Enzymes [BR:
smd01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
Smed_3443
Transfer RNA biogenesis [BR:
smd03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
Smed_3443
Prokaryotic type
Smed_3443
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
TruB_C
Motif
Other DBs
NCBI-ProteinID:
ABR62261
UniProt:
A6UF31
LinkDB
All DBs
Position
3650075..3651007
Genome browser
AA seq
310 aa
AA seq
DB search
MSRPRKPKGRPISGWLILDKPLDFGSTEAVSKIKWLFKAQKAGHAGTLDPLASGMLPIAL
GDATKTVPYVMDGRKIYEFTVAWGEERSTDDLEGEVVRSSADRPAEEAIRALLPKYTGVI
AQVPPQFSAIKIGGERAYDLAREGETVDIPAREVEVFRLSLIGSAPSLAQFEIECGKGTY
VRSLARDMGRDLGCFGHIASLRRTFVAPFGEEDMVPLADLVALEKIEDEAERLAALDEHL
IDTGEALSDLPHIAVNDDQAHRLRMGNPIILRGRDAPLPTPEAYATVQGKLVAIGEIAEG
EFRPKRVFAG
NT seq
933 nt
NT seq
+upstream
nt +downstream
nt
atgtccagaccccgcaaaccaaagggccgcccgatttcaggatggctaatcctcgacaag
cctctcgatttcggttcgaccgaggcagtatccaagatcaaatggctgttcaaggcgcag
aaggcgggccatgccggcaccctggatccgctggcgtccggaatgctgcccatcgcgctc
ggcgatgcaacgaagaccgtgccttatgtcatggatggccgcaagatctacgaattcacg
gtcgcctggggcgaggaacgctcaacggacgacctcgaaggggaggtcgtccgctcctcc
gcggaccgtccggcggaagaggcgatccgggctctgctgcccaaatataccggcgtgatc
gcacaggtgccgccgcagttttcggcgatcaagatcggcggcgaacgcgcctatgatctc
gcacgagagggtgaaaccgtcgacatcccggcgcgtgaggtggaagtctttcgtctttcg
ctcatcggctccgcgccaagtctcgcacagttcgaaatcgaatgcggcaagggcacctat
gtccgctcgctggcccgcgacatgggccgtgatctcggttgcttcggccatatcgcgtcg
ctgcgccgaacgttcgtcgctcccttcggcgaggaggacatggtgccgctcgccgatctc
gtcgcgttggagaagatcgaggacgaggcggaacgtctcgccgcgctggacgagcatctg
atcgataccggagaggccttgtccgaccttccccatatcgccgtcaatgacgaccaggcg
caccggctccgaatgggcaacccgatcattctgcgcggacgcgacgcgccactgcccacg
ccggaggcctatgccaccgtacaaggcaagcttgtggcgatcggcgaaatcgccgaaggc
gaatttcggccgaagcgcgttttcgcaggctag
DBGET
integrated database retrieval system
