Sinorhizobium medicae: Smed_3573
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Entry
Smed_3573 CDS
T00555
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
smd
Sinorhizobium medicae
Pathway
smd03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
smd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Smed_3573
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smd03400
]
Smed_3573
Enzymes [BR:
smd01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Smed_3573
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Smed_3573
DNA repair and recombination proteins [BR:
smd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Smed_3573
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
ABR62388
UniProt:
A6UFF8
LinkDB
All DBs
Position
3780080..3781000
Genome browser
AA seq
306 aa
AA seq
DB search
MPELPEVETVKRGLAPTMEGALLVRAELRRPDLRFPFPENFEDAVAGRRIVALSRRAKYL
TIELEGGDVIIAHLGMSGSFRIEFDGPGEGRIKESADPAVPGDFHRPRSKDEKHDHVVFH
LDASCGPARVIYNDPRRFGFMALARREALAEHVFLRGLGEEPTGNALDAAYLAARFSGKA
QPLKAALLDQRTIAGLGNIYVCEALWRSGLSPKRAAGTLVDKRARPKQALVQLTDAIRAV
IADAIAAGGSSLKDHIQADGSLGYFQHSFSVYDREGEACRTSGCRGTVERIVQAGRSTFY
CPHCQK
NT seq
921 nt
NT seq
+upstream
nt +downstream
nt
atgccggaattgcccgaggtggaaacggtcaagcgcggactggcgccgacgatggaggga
gcacttctcgtgcgcgccgaattgcgccgtcccgatctgcgctttccctttcccgagaat
ttcgaggacgcagtcgccggccggcgtatcgtcgcgctctcgcgccgcgccaaatatctg
acgatcgagctggagggcggcgacgtcatcatcgcccatctcggcatgtccggctcgttc
aggatcgagtttgacggtcccggggagggccgcatcaaggagagcgccgatcccgccgtc
cccggcgatttccaccgtccgcgcagcaaggacgagaaacacgaccatgtcgtcttccat
ctcgatgcctcctgcggcccggcccgggtcatctataacgatccacgccgcttcggcttc
atggctctggcgcggcgcgaagcgcttgccgagcacgtctttcttcgcggcctcggcgag
gagccgaccggcaacgctctcgatgcggcctatctcgccgcccggttctccggcaaagcg
cagccgctgaaagccgctcttctcgatcaaaggacgatcgccggcctcggcaatatatac
gtttgcgaggcattgtggcgttcgggcctttcgccgaaaagggcggcaggtacgctcgtc
gacaagcgggctcgcccgaagcaggcgctggttcagctgacggatgcgatccgcgccgtc
atcgcagatgcgatcgccgccggcggttcctcgctcaaggatcacattcaggcggatggc
agtcttggctatttccagcacagcttctccgtctatgacagagaaggcgaggcttgccgc
acgtccggctgccgcggtacggttgagcgcatcgttcaggcagggcgttcgaccttttac
tgtccgcactgccagaaatag
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integrated database retrieval system
