Sinorhizobium medicae: Smed_4116
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Entry
Smed_4116 CDS
T00555
Name
(GenBank) Alanine racemase
KO
K05499
LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
Organism
smd
Sinorhizobium medicae
Brite
KEGG Orthology (KO) [BR:
smd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
smd03000
]
Smed_4116
Transcription factors [BR:
smd03000
]
Prokaryotic type
Helix-turn-helix
LacI family
Smed_4116
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peripla_BP_3
Peripla_BP_1
LacI
Peripla_BP_4
HTH_IclR
MarR
HTH_3
HTH_11
HTH_24
HTH_36
TetR_N
Motif
Other DBs
NCBI-ProteinID:
ABR62923
UniProt:
A6UGZ3
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Position
pSMED01:582453..583457
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AA seq
334 aa
AA seq
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MKNRPKIKDIAEKAGVSVATVSRALADSALVTAETRQRVHDLARELDYRPNVSARNLRTR
KSMAVLMVVRDVGNPFYLEILKGVEATAREAGYAVLMGNTENDPARETEYFDMLRDGHAD
GMILMTGKLPPSGGWTHLAVVVALEMIEGSGLPHVQVDNVAAARGAVEHLISLGHRRVAH
ISGPVPEPMSVYRREGYRLAMRDAGLEIPRGYEARGDFLIESGERCCRSLFSLSDPPTAL
FVANDEMAYGAVHQLRRMGRDVPRDVSVVGFDDLYLSKAFYPPLTTVGQPRAEIGRTAMA
VLLGILAGDGAYGIQPIVLPTTLKVRGSTAPPRF
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaccggccgaagatcaaggacatcgcggaaaaggccggggtatcggtggcaacc
gtctcgcgcgcgcttgcagattccgcgctggtgacggccgagacgcgccagcgcgttcat
gacctggcgcgcgagctcgattatcgcccgaatgtcagcgcccgcaacctgcgtacgcga
aagtccatggcggtactcatggtcgtgcgcgacgtcggcaatcccttttatctcgaaatc
ctcaagggcgtcgaggcgacggcccgcgaggcgggctatgccgtgctgatgggaaatacg
gagaacgacccggcccgcgagaccgaatatttcgacatgctgcgcgacggacatgccgac
ggcatgatcctgatgaccggcaagctgccgccctcggggggctggacccatcttgcagtg
gtggtcgcgctggaaatgatcgagggctcgggcctgccccatgttcaggtcgacaacgtc
gccgcggcacgcggtgccgtcgagcacctgatttcgctcgggcaccggcgggttgcccat
atctcggggccggttcccgagccgatgagcgtctatcgccgtgagggctatcgcctcgcc
atgcgcgacgccggcctggagatcccccgggggtacgaagcgcggggtgacttcctcatc
gagagcggcgagcgatgctgccggtcgcttttctcgctttccgatccgccgaccgcactc
ttcgtcgccaatgacgaaatggcttacggggccgtccatcagctcaggaggatgggacgc
gacgttccgcgcgacgtatcggtcgtcggcttcgatgacctctatctgagcaaggccttc
tatccgccgctgacgacagtcggacagccgcgggccgagatcggccgcaccgccatggcg
gtgcttcttggaatactggcgggcgacggcgcttatggaatccagccgatcgtgcttccc
acgaccttgaaggtgcggggaagcacggcgcctccacgtttctga
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