Sinorhizobium medicae: Smed_4130
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Entry
Smed_4130 CDS
T00555
Name
(GenBank) chaperonin GroEL
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
smd
Sinorhizobium medicae
Pathway
smd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Smed_4130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smd03019
]
Smed_4130
03110 Chaperones and folding catalysts [BR:
smd03110
]
Smed_4130
03029 Mitochondrial biogenesis [BR:
smd03029
]
Smed_4130
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
smd04147
]
Smed_4130
Enzymes [BR:
smd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
Smed_4130
Messenger RNA biogenesis [BR:
smd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
Smed_4130
Chaperones and folding catalysts [BR:
smd03110
]
Heat shock proteins
HSP60 / Chaperonin
Smed_4130
Mitochondrial biogenesis [BR:
smd03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
Smed_4130
Exosome [BR:
smd04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
Smed_4130
Exosomal proteins of other body fluids (saliva and urine)
Smed_4130
Exosomal proteins of breast cancer cells
Smed_4130
Exosomal proteins of colorectal cancer cells
Smed_4130
Exosomal proteins of bladder cancer cells
Smed_4130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-ProteinID:
ABR62936
UniProt:
A6UH06
LinkDB
All DBs
Position
pSMED01:complement(597851..599485)
Genome browser
AA seq
544 aa
AA seq
DB search
MSAKEIIFSTEVRDRLLRGVELLNNAVKVTLGPKGRNVVIDRSYGAPRITKDGVSVAKEI
ELEDKFENMGAQMVREVASKTNDLAGDGTTTATVLAASIFREGAKLVAAGMNPMDLKRGI
DLAVTAVLAEIKLRATKVNSSSEIAQVGTIAANGDASVGEMIAGAMEKVGNEGVITVEEA
RTADTELDVVEGMQFDRGYLSPYFVTNAEKMRVELDDPYILIHEKKLGNLQTMLPILEAV
VQSGKPLLIISEDVEGEALTTLVVNKLRGGLKIAAVKSPGFGDRRKAMLQDIAVLTAGQM
ISEDIGIKLENVTLDMLGRARRVLIEKDTTTIIDGSGDKASIQACISQIKAQIEETTSDY
DKEKLQERLAKLTGGVAVIRVGGATELEVKEKKDRIDDALNATRAAVEEGIVAGGGVALL
RAKSALASLTGENPEITAGIAIVRKALEAPIRQIADNAGVEGSIVIGKLVDSSDQNQGFD
AQTETYVDMIKAGIVDPAKVVRTALRDAGSIAALLITAEAMVADIPEKNAAQNAGNGAMG
GRGY
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
atgtccgccaaagaaatcatcttctccaccgaagtccgcgatcgcctgcttcgcggcgtg
gaattgctcaacaatgccgtcaaggtgacgctcggcccgaagggccgcaacgtcgtcatc
gacaggtcgtatggcgcaccacgaatcaccaaggacggcgtctccgtcgccaaggaaatc
gagcttgaagacaagttcgagaacatgggcgcgcagatggtgcgcgaagtggcatcaaag
accaatgatcttgccggcgacggcaccacgacggcgactgtgcttgccgcgtccatcttc
cgcgaaggcgccaagctggtcgcggcgggcatgaacccgatggatcttaagcgcggtatc
gacctcgccgttaccgcggtcctcgcggaaatcaagctgcgcgccacgaaggtcaattcg
tcgagcgagatagcacaggtcggcacgatcgccgccaatggcgacgccagcgtcggcgag
atgatcgcaggggcgatggagaaggtcggcaacgagggtgtcattaccgtcgaagaagcc
aggaccgccgataccgaactcgacgtcgtcgaaggcatgcagttcgaccgcggatatcta
tcgccgtacttcgtgaccaatgccgagaagatgcgcgtggaactggacgatccctacatc
ctcattcacgagaagaagctcggcaacctgcagaccatgctgccgatccttgaggccgta
gtgcagagcggcaagcctttgctcatcatctccgaagacgtggaaggcgaagcgttgacg
acgctcgtcgtcaacaagttgcggggaggtctgaagatcgccgccgtgaagtcgccgggc
ttcggcgaccgccgcaaggccatgctgcaggacattgccgttctgaccgccggccagatg
atttccgaagatatcggcatcaagctcgaaaacgttacgctcgatatgcttggccgcgcc
aggcgggtgctgatcgagaaagacacgaccacgatcatcgacggctccggggataaggcc
tccatccaggcatgcatcagccagatcaaggcgcagatcgaagagacgacatccgactac
gacaaggagaagctgcaggagcggctggcgaagctcaccggcggcgtcgcggtaattcgc
gtcggcggcgcgaccgagcttgaagtcaaggaaaagaaggaccgcatcgacgatgccctg
aacgccacccgcgcggcagtcgaggaaggcatcgttgccggcggcggcgtggcgttgttg
cgtgcgaaatcggcgcttgccagtctcaccggcgagaaccccgagattaccgcaggcatc
gcgatcgtgcgcaaggcactggaggcaccaatccggcagatcgccgacaatgccggcgtc
gaaggctcgatcgtcatcggaaaactcgtcgacagcagcgaccagaaccagggcttcgat
gcgcagacggaaacctatgtggatatgatcaaggccgggatcgtcgatcccgccaaggtc
gtgcggacagccttgcgggacgccggctcgattgccgcactcctgatcaccgccgaagcc
atggtcgccgatatcccagagaaaaacgccgctcaaaatgccggaaacggcgcgatgggc
gggagaggatactga
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