Sinorhizobium medicae: Smed_4174
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Entry
Smed_4174 CDS
T00555
Name
(GenBank) thiamine biosynthesis protein ThiC
KO
K03147
phosphomethylpyrimidine synthase [EC:
4.1.99.17
]
Organism
smd
Sinorhizobium medicae
Pathway
smd00730
Thiamine metabolism
smd01100
Metabolic pathways
smd01240
Biosynthesis of cofactors
Brite
KEGG Orthology (KO) [BR:
smd00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00730 Thiamine metabolism
Smed_4174
Enzymes [BR:
smd01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.17 phosphomethylpyrimidine synthase
Smed_4174
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ThiC_Rad_SAM
ThiC-associated
Motif
Other DBs
NCBI-ProteinID:
ABR62979
UniProt:
A6UH49
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All DBs
Position
pSMED01:complement(647437..649269)
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AA seq
610 aa
AA seq
DB search
MNLFKPLGATPSVTQGPLPASQKVYRPGDIHPDIRVPMREITLHPTSGEPPVTVYDASGP
YTLENADIRIDAGLPRLRHDWILKRGGVESYEGRAVKAEDNGFASGERLTPEFPVRNQPL
RAKPGQAVTQIAFARAGIITPEMEFIAIRENLGRKAAKEVLTRDGESFGASVPDFVTPEF
VRQEVAAGRAIIPANINHPESEPMIIGRNFLVKINANIGNSAVTSSMAEEVEKMVWATRW
GADTVMDLSTGRNIHNIREWIIRNSPVPIGTVPLYQALEKVNGIAEDLSWEVFRDTLIEQ
AEQGVDYFTIHAGVRLHYIPLTVDRVTGIVSRGGSIMAKWCLHHHQESFLYEHFEEICDI
CRAYDVSFSLGDGLRPGSIADANDRAQFAELETLGELTQIAWARDCQVMIEGPGHVPMHK
IKENMDKQLAVCGEAPFYTLGPLTTDIAPGYDHITSGIGAAMIGWFGTAMLCYVTPKEHL
GLPDRNDVKMGVITYKIAAHAADLAKGHPAARIRDDALSRARFEFRWEDQFNLSLDPETA
RNFHDETLPKEAHKVAHFCSMCGPKFCSMRISHDIRAEAQKEGLEAMAAKYRDGGDLYMP
VDGSDAPTGE
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atgaatctattcaagcctctcggcgcgaccccttcggtcacccaagggccgctccccgcg
tcccaaaaggtctacaggccgggcgatatccatcccgacatccgcgtgccgatgcgcgag
atcaccctgcatccgacctcgggcgaaccgccggtgaccgtatacgacgcctccggaccc
tacacgcttgagaatgccgatatccgcatcgacgcaggactgccgcgtctgcgccacgac
tggatcctgaagcgcggcggcgtggaaagttacgagggccgagcggtcaaggcggaagac
aacggctttgcgagcggcgagcgcctcacgccggaattcccggtgcgcaatcagccgctt
cgcgccaagccgggacaagcggtcacccagatcgcctttgcccgcgccggcatcatcaca
ccggaaatggagttcatcgccatccgcgaaaatctcggccgcaaagccgcgaaggaggta
ctcacgcgcgatggcgagagcttcggcgcatcggtccccgatttcgtcacgccggaattc
gtccgccaggaggtggccgccggccgggccatcattccggccaacatcaaccatccggag
tcggagccgatgatcatcggccgcaactttctggtgaagatcaacgcgaatatcggcaat
tccgccgtgacttcctcgatggccgaggaagtcgagaagatggtatgggcgacccgctgg
ggcgccgatacggtcatggacctttccaccggccgcaacatccacaatatccgcgaatgg
atcatccgcaattcgccggtgccgatcggcacggtaccgctttaccaggcactggaaaag
gtgaacggcattgccgaggacctttcctgggaggtcttccgcgacacgctaatcgaacag
gcggaacagggcgtagactatttcaccattcatgccggcgtcaggctccactatatcccg
ctcaccgtcgatcgagtcaccggcatcgtctcgcgcggcggatcgatcatggccaagtgg
tgtctgcatcaccaccaggagagcttcctctacgagcatttcgaggagatctgcgacatc
tgccgcgcctatgacgtttccttttcgctgggcgacggtctgcggcccggttctatcgcc
gacgccaacgaccgggcgcagttcgccgaactcgaaacgctcggcgagttgacgcagatc
gcctgggccagggattgccaggtgatgatcgaaggccccggccacgtgccgatgcacaag
atcaaggagaacatggacaagcagcttgccgtttgcggcgaagcgcctttctacacgctg
gggccgctgaccaccgatatcgcgccgggctacgaccacatcacctccggcatcggcgcg
gcgatgatcggctggttcggcaccgcgatgctctgctacgtgacgccgaaggagcatctg
ggccttcccgaccgcaacgacgtcaagatgggcgtcatcacctacaagatcgccgcgcat
gccgccgatctcgccaaggggcatccggccgcgcgcatccgtgacgatgcactgtcgcgc
gcgcgcttcgagttccgctgggaggatcagttcaatctctcgctcgacccggagacggcg
cggaacttccatgacgaaacgctgccgaaggaggcgcacaaggtcgcgcatttctgctcc
atgtgcggtccgaaattctgttcgatgcggatttcccacgacatccgtgccgaggcgcag
aaggagggccttgaggcgatggcagcgaaataccgcgacggcggcgatctctatatgccg
gtcgatgggagcgatgcgcccactggagaatga
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