Sinorhizobium medicae: Smed_4252
Help
Entry
Smed_4252 CDS
T00555
Name
(GenBank) outer membrane autotransporter barrel domain
Organism
smd
Sinorhizobium medicae
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Autotransporter
AC_1
Phage_OMP
Pertactin
Motif
Other DBs
NCBI-ProteinID:
ABR63057
UniProt:
A6UHC7
LinkDB
All DBs
Position
pSMED01:738913..741507
Genome browser
AA seq
864 aa
AA seq
DB search
MPDISPGRTSFAASDRALRRLSILNAHVLPGAPSASSDRIRCEFNKLLLGSVASIALFCS
LDSEARAACVETSPGAYDCSGTGPGPTFTGQSVTINADPTASFTSDVSITGPGTSTLNNN
GTLTNSLRATDNDRFTLNNRGLIDGTIFLGGSGANVIINYAGGDVQNGVTSTGDSHDTVI
NRGFFAGSIVLGDGYDVLGLIEGTVQTSVDMGAGDDQFTWLVGNIAATVQMGEGDDRAVF
GSLTQQNLSAGKRVDGGLGIDTLVWENTTNDDGGGSGDHPENIVNWEEIELRNGSEMTFI
YSTGNLTLGDSASGTGTLSIDETSAVRAGNSFGYGVRAFDPSQLVTVYNAGIIDMTNDTV
NVGDLLHDTFTVYGNYVGQQGGLQLHTVLESDDAPSDKLVISGTGASASGGTSILITNVG
GQGALTLADGIRVVDATAGATTEGTAFTLGAPVAAGIFEYKLYRGGLTEDPDNDDDWFLR
SGGVSPPPPPPPPPPPPPPPPPPSPPPPPPPSPPPPPPPPPPPPPPPPPPPPPPGPSPIT
PSVRPEIPGYIVKPALMQKMGVAAIGTFHERQGDQFLLNSNGYLPGAWGRLFGESFDQSW
SSKISRFEFEVSPSSSGELWGLQAGQDLIGALHDDGSQDRVGVFFAYTGTSGSNGGNTLG
RLQVESGSIDLHANSIGAYWTHIGADGWYVDSIGMYSWLDGGSNSDRGIGVDTSGNSTAL
SIEAGYPFRFDNGWVLEPQGQLIWQHVDLDDANDRFTGIDYESFGTWTGRLGVRLEANTT
MNDVPVQPFASVNLWHDFDQDYKVSFNRVPVVTELEQTLLELNVGFSAQMSETVSVYGGL
QFATGLDDDDNRGYGGNIGLRIKW
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atgccggacatttcgccgggccgcacaagcttcgcggccagtgacagggcacttcgccgc
ttgtcgatattgaatgctcatgtcttgccgggggctccgtctgcctcaagcgatcgcatt
cggtgcgaattcaacaaactccttctcggttcggttgcctcgattgcgctcttttgcagc
ctcgactccgaggctcgggcggcctgcgtcgaaacgagccccggcgcctacgactgctcg
gggacgggccccggtccaacatttacagggcagtccgttacgatcaatgccgatcccacc
gcgagcttcacgagtgatgtctcgatcaccggacccggcacgagcacgctcaacaataac
ggcacgctcaccaacagcctgcgcgccacggacaacgaccgcttcacgctcaacaatcgc
ggcctgatcgacgggacgatttttctcggcggctcgggagcgaacgttattatcaactat
gccgggggcgacgttcagaacggcgtcacgagcacgggagattcccacgacacagtaatc
aaccgcggcttttttgccgggtcgatcgttctcggcgacggatacgacgtgctgggtctg
attgaggggaccgtccagacatctgtcgatatgggagcgggcgacgaccagttcacctgg
ctggtcggaaacattgctgcaaccgtccagatgggcgagggcgacgaccgagcggtcttc
ggaagcctgacgcagcagaatctcagcgccggcaagagggtcgacggcggtctgggaatc
gacaccctggtgtgggagaatacgaccaacgacgatggaggcggttcgggcgatcatccg
gaaaacatcgtcaactgggaggaaatcgagctacgcaacggctcggaaatgaccttcatc
tacagcaccggcaatctgacgctcggcgattccgcatccggaaccgggacgctctcgatc
gacgagacgagcgcggtcagggctggaaattccttcggctatggcgtcagagcgttcgat
ccatcgcaattggtgacggtctacaatgccggcatcatcgatatgacgaacgacacggtg
aatgtcggtgatctcctgcacgacaccttcacggtctacggcaactatgtcggccagcag
ggtgggctgcagctgcacacggtgctcgaaagcgacgatgcgccctcggacaagctggtc
atcagcggcacgggcgcgagcgcctctggcggaacctcgattttgatcaccaatgtcggg
gggcagggagcgctgacgctcgccgacggcatcagggtcgtggatgccactgccggtgca
accactgaggggactgccttcacgctgggcgctcccgtcgcagcaggcattttcgagtat
aagctctatcgcggcggtctgaccgaagatccggacaacgacgacgactggttcttacgc
tccggcggcgtttcgccaccaccgccgccgccaccgccgccaccgccgccaccgccaccg
ccgccgccgtcaccaccgccgccgccgccgccgtcaccaccgccgccgccgccaccgccg
ccgccaccgccgccgccgccgccgccgccgccgccaccgccgggaccgtcgccgatcacg
ccgtcggtacggccggaaatacccggctacatcgtgaagccagcgcttatgcagaagatg
ggcgtggcagccattggcacctttcacgagcggcagggcgaccaattcctgctgaacagc
aacgggtatctccccggagcgtggggacggctgttcggcgagtcgttcgatcaaagctgg
tcgtccaagatcagcaggttcgaattcgaggtcagtccgtcctcctcgggagagctgtgg
ggacttcaggccggtcaggacttgatcggagccctgcacgacgacggaagccaggatcgc
gtcggcgtgttctttgcttataccggcacgtcgggatcgaacggaggcaatacgctcggg
aggctgcaggtcgaatcgggctcgatcgatctccatgccaactcgatcggcgcctattgg
acgcatatcggagcggacggctggtatgtggacagtatagggatgtactcatggctggat
gggggttcgaactccgatcggggcatcggggtcgacacatccgggaactcgaccgccctt
tcgatcgaggcgggttatccgttcaggttcgataacggatgggtgctcgagccacagggc
cagcttatctggcaacatgtagacctggatgacgcgaatgaccgcttcaccggcatcgac
tatgagtccttcggaacatggacgggccgtctcggtgtgaggctcgaagcaaacacgacg
atgaacgatgttccagtccagcccttcgccagcgtcaacttgtggcatgatttcgatcag
gactataaggtctcgttcaaccgggttcctgtcgtaacagaactggaacagacgttgctc
gaattgaatgttgggttttcggcccagatgagcgagacggtcagcgtctatggcggcctg
cagtttgcgacaggcctcgacgatgacgacaacaggggctacggcggcaatataggcttg
cgcatcaaatggtag
DBGET
integrated database retrieval system
