Sinorhizobium medicae: Smed_4410
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Entry
Smed_4410 CDS
T00555
Name
(GenBank) putative DNA topoisomerase I protein
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
smd
Sinorhizobium medicae
Brite
KEGG Orthology (KO) [BR:
smd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smd03032
]
Smed_4410
03400 DNA repair and recombination proteins [BR:
smd03400
]
Smed_4410
Enzymes [BR:
smd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
Smed_4410
DNA replication proteins [BR:
smd03032
]
Prokaryotic type
DNA Topoisomerases
Smed_4410
DNA repair and recombination proteins [BR:
smd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Smed_4410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
ABR63214
UniProt:
A6UHT4
LinkDB
All DBs
Position
pSMED01:904990..906108
Genome browser
AA seq
372 aa
AA seq
DB search
MARAMSVDVLECRPAGLADLPQRLAAIGSVPEETGLVYVSDSEPGIRRQRRGKGFAYRMP
DGSIVTDPSVKSRIAALGLPPAYENVWICLDERGHLQATGYDARGRKQYRYHSEWQALRS
ADKFAQLTEFGKALPKIRRTIRRHMQGGVENMQTVLAALVALLDEAHLRTGNQAYVQANG
SYGATTLLKRHLRLGDGFIELKFTGKGGKRVQRVLRRPKLQRLLEEIADLPGRQLFVWKD
ENDALRPVDSGRLNRYLTDMAGTAISAKTFRTWGGTLAAFTVARTSIERGEWPTIKQMSE
AAASVLHNTPAISRSSYIHPDVLALADKSAPVSARQLQARGRSGSELRVEEQRLLGFLQR
SAGTKKRLPLPQ
NT seq
1119 nt
NT seq
+upstream
nt +downstream
nt
atggctagagcaatgtcggtcgacgtgctggaatgtcgacctgccgggctcgccgatctc
ccgcagcggctcgcggcgatcgggtctgtgcccgaggaaactgggctcgtctacgtcagc
gacagcgagccgggtattcggcgccaaagacgtggcaaagggttcgcgtatcgcatgccg
gacggatcgatcgttaccgatccgtctgttaaaagccgcatagcggcactgggattaccg
cctgcctatgagaacgtctggatctgccttgacgaacgaggccacctgcaggccaccggc
tatgatgcgcgcggccgaaagcagtatcgttatcacagcgaatggcaggccctcaggagc
gccgacaaatttgcgcaactgacggaattcggcaaagctttgcctaagatacgccgcacc
atacggcgccacatgcagggcggcgtggaaaacatgcagaccgtgcttgcggcgctcgtg
gccctgctggacgaagcgcatctgcgcaccggcaaccaggcttatgtgcaggccaacgga
agttatggcgcaaccactttgctgaagcggcatctcagacttggcgacggctttatagaa
ttgaaattcaccggaaagggtggcaagcgcgttcagcgggtgctccgtcgcccgaagttg
cagcgactgctcgaagaaatagccgatctcccgggcaggcagcttttcgtctggaaggat
gaaaacgacgcgcttcgaccggtcgattccggccggctcaaccggtatctcacggacatg
gccggcacagcgatctcggcaaagacattccgaacatggggcggcactctcgccgctttc
acggtcgcgcggacctcgatcgagcggggtgagtggccgacgatcaaacagatgagcgag
gcggctgcatccgtgcttcacaacacgcccgcaatcagccggagcagttacattcatccg
gatgtgctcgcccttgccgacaagtcggccccggtctccgcgcggcagcttcaggcgcgt
gggcgttcaggaagtgaattgcgtgtggaggaacagcgtttgctaggctttcttcagcgc
agcgcggggacgaaaaagcgcctgcccttgccccagtga
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