Sinorhizobium medicae: Smed_4572
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Entry
Smed_4572 CDS
T00555
Name
(GenBank) hypothetical protein
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
smd
Sinorhizobium medicae
Pathway
smd00040
Pentose and glucuronate interconversions
smd01100
Metabolic pathways
smd02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
smd00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
Smed_4572
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
Smed_4572
Enzymes [BR:
smd01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
Smed_4572
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP3_bac
DUF6824
Motif
Other DBs
NCBI-ProteinID:
ABR63372
UniProt:
A6UI92
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All DBs
Position
pSMED01:1062364..1063977
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AA seq
537 aa
AA seq
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MIPLRKLWACLPRQRAVLACLCDGSAFENPVQAVSFGRPSVSALTRRHERMTAINKSQDV
RALGFTIAHCLILGGVLCGSWLAFPAKTAAQTTLAEPLPPKLPDGRQRAFPTAEGFGAGS
LGGRGGKVLYVVNTDESGPGSLRACIEASGPRVCVFRTGGTIVLRERSLVVRNPFLTIAG
ETAPGGGIAIRNGDKQIRPSIEIVTNDVIIRHIRLRPGPHAVRACCSGGLGMYSAAAKDI
MLDHISASWGSDETVDSEDASNFTWQWGIASEPLLRGGPGKKNRARNMLFTKGGNISVHH
SLFAFGQFRNPLIKMKIPGAVADVVNNVFFSPKWQYVLSFGDEWGHIRANVVGNYKIAGE
NLQNDHMVHLFDERGGGHAIYVKDNYDEPYRTQPGQDDSLVLAESQRGSVSPQAFNAEAV
RASGPEIAYDEVLAHAGATKPQRDAIDRRIVEDVKNRRGRLLANDPNDVGGWPELDAGIP
YQDSDMDGISDDWEVANGTDPKNADDAKSDQDGDGWTNLESFLHFMAGDTADAASHE
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
gtgatacctctacgaaagctgtgggcatgtctgccgcggcaaagggcggttctggcgtgc
ctttgcgacggttcagcattcgagaatcctgtacaggccgtttctttcggcagaccatca
gtttcagctttgactcggcggcacgagagaatgacggcaatcaataagtcgcaggacgta
agggcacttggtttcacgatagctcactgcctgatattgggaggggtgctctgcggatca
tggctcgcctttccagcgaaaacggccgctcagaccacgttagccgagcctcttccacct
aagcttccggacggcaggcaacgcgccttccccacggctgaaggcttcggtgccggctct
ctcggcgggcgagggggcaaagtgctctatgtcgtcaacaccgacgagtcaggcccgggt
tcgctgcgcgcgtgcatcgaagcctcaggaccgcgcgtctgtgtcttccgaacgggcggc
accatcgttctgcgcgagaggtccttggtcgttcgaaatccatttctgacgatagccgga
gagaccgcgccaggtggtggcatcgcgatccgcaacggcgacaagcaaattcgcccttca
atcgagatcgtgacaaacgacgtgatcatcaggcacattcgccttcgcccaggcccacat
gccgttagggcctgttgttcgggcgggcttggaatgtattccgcggccgccaaggacatc
atgcttgatcatatctcggccagttggggttctgacgagactgtcgattcggaagatgcg
agcaattttacctggcagtggggaattgcgagcgaaccgctgctgcggggcggaccggga
aaaaagaaccgtgcacgcaacatgctgtttacgaagggtggaaacatctccgtccaccac
tcgctctttgcttttggccagttcaggaatccgttgataaagatgaagattcccggagca
gtagccgacgtcgtgaacaatgtttttttctcgccaaagtggcaatacgtcctcagtttc
ggcgatgaatggggccatattcgtgccaacgtggtcggcaactacaagatcgctggagag
aaccttcaaaacgaccatatggtccatctcttcgatgagcgcggtggcggccatgcgatc
tatgtgaaggacaactacgacgaaccctatcgcacgcagcccgggcaggatgacagcttg
gttctggcggaaagccaaagagggtctgtttcgccacaggcgttcaacgcagaggcagtc
cgagcttccgggcctgaaattgcttacgacgaagtcctggcacacgccggtgccacaaag
ccgcaacgggacgccatcgatcgccgcatcgtcgaggacgtcaagaaccgccgtgggcgg
ttgctcgcgaacgatcccaacgacgttggcggttggccggagctcgatgccggtattcca
tatcaggacagcgacatggacggcatttcagatgactgggaggttgccaacggcaccgac
ccgaaaaatgccgacgacgcgaaatccgaccaggatggtgacggttggaccaacctcgag
agcttcctccacttcatggccggcgataccgctgacgctgccagccacgagtga
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