Sinorhizobium medicae: Smed_5215
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Entry
Smed_5215 CDS
T00555
Name
(GenBank) helix-turn-helix-domain containing protein AraC type
KO
K07506
AraC family transcriptional regulator
Organism
smd
Sinorhizobium medicae
Brite
KEGG Orthology (KO) [BR:
smd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
smd03000
]
Smed_5215
Transcription factors [BR:
smd03000
]
Prokaryotic type
Helix-turn-helix
AraC family
Smed_5215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HTH_18
HTH_AraC
AraC_binding
Cupin_6
AraC_binding_2
Motif
Other DBs
NCBI-ProteinID:
ABR63992
UniProt:
A6UK12
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All DBs
Position
pSMED02:177956..178951
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AA seq
331 aa
AA seq
DB search
MEDMKASRRKALPRIPILIGGTLHIPPAVEEKTTPPERTSPLGLEQYIAGRTLVSGDGPA
WDDMFVQVYSRLKKQEPFLVPAVAEPLIVWVISGEAIVEEREIDRDWVTNTVTVGDFFLT
RSPTPYEMRWRATGAAPFQVMHLYLSVPLFERVAKDLLGRAARPALRDVSGGKDEQLSHL
LALIHQELTAEGKGSQLFIQGLAQSLAVHLIRNYASNGSEGGRQTALPGFKLRRAVAYLE
EHLAEPFNLAKLSEAVGMSEFHFSRLFKKATGLSPSRYFIRQRVARAQLLLQETDTSIIK
IGMSVGYSSPSHFAQVFRRETGLPPSHYRRG
NT seq
996 nt
NT seq
+upstream
nt +downstream
nt
ttggaagatatgaaagcatcccgccgcaaagcacttccccgaataccgatattgatcggc
ggcacgttgcatatcccgccagccgtagaagaaaagactacgccgcctgaacgaacctcc
ccgttaggtcttgaacaatacattgccggccgaacgcttgtgagcggcgatggaccggcc
tgggacgatatgttcgtacaggtctattcccgcctcaagaagcaggaaccatttcttgtt
cccgccgtcgccgagccgcttattgtgtgggttatatctggcgaggcgatcgttgaagaa
cgtgagattgatcgtgactgggttaccaacaccgtgacggtcggggactttttcctgacg
cggtctccgacaccctacgaaatgcgctggcgtgcgacaggcgcggctcctttccaggtg
atgcacctctatttgtcagttcctctcttcgagcgcgtcgcaaaagatctgcttggccgc
gctgcgcgccccgcactgcgtgacgtatccggtggcaaggacgagcagctgtcgcacctt
ctggccctgatccatcaggaacttacggctgaagggaaaggcagccagctgttcattcag
ggacttgcccagagtctcgccgtccacctgatccggaactatgcgtcgaatggctccgaa
ggcgggcggcagacagcacttccgggtttcaagcttcggcgcgctgtcgcctatcttgaa
gaacacctggctgagccattcaatctcgcgaaactatccgaggccgtaggcatgagcgag
ttccatttcagccgtctgttcaagaaggcgacgggcctctcgccctccaggtatttcatt
cgccagcgtgtcgccagagcacagctgctcctgcaggagacggacacgagcattatcaag
atcggcatgtccgtgggctattcgagcccaagtcactttgcccaggtcttccggcgcgag
acaggtctcccgccgagccactatcgtcgaggttag
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