Sinorhizobium medicae: Smed_5440
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Entry
Smed_5440 CDS
T00555
Name
(GenBank) UvrD/REP helicase
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
smd
Sinorhizobium medicae
Brite
KEGG Orthology (KO) [BR:
smd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smd03400
]
Smed_5440
Enzymes [BR:
smd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Smed_5440
DNA repair and recombination proteins [BR:
smd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
Smed_5440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C
UvrD_C_2
PDDEXK_1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ABR64202
UniProt:
A6UKM2
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All DBs
Position
pSMED02:complement(400856..404011)
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AA seq
1051 aa
AA seq
DB search
MSDHITLVPAGAGSGKTYRIETTLADLVVSGEVSADRILAVTFTEAAASDLRTRIRGALL
ARGRIDEALAIDGAYVGTIHALGLRLLTEHTFAANRSPASRLLSDSERDLLIRQQIGRAP
ALALILNALPRFGYVWDRNTDATGEEQLRKKVMQTIDLLRSLGQRGAASEIIDPAIADLR
ATYGTTKDSARLEMALSRAVNALLTSFPESIADTVSAKTAREAFDKDFEALRRASRTDAL
GSDWALWQRLRKLRLSNSKTKAPEGYDPLASAVVAAADELRYHPGPLMDAERHLTALVHG
AQEIMSAYENEKRARGLIDYADMIVETEVLLRTRSDILDAALAEIDCVVIDEFQDTNPVQ
FAMLWRLAARAPRALIVGDRKQAIMGFQGADPRLSEALDAAHPASVDPLTQNWRSDPRIM
TFVNAIGPALFPSGYDALKSMRPKSGETALEFIEFDGSKAKVFEGIAAHARDLTDQKILI
IDKSTQETRQARPADIAILVYSGIDARRVATSLRDFGLPVRLAEDGWFLSQIIQVARAAL
ALVADPTDRLAALLLLSLGPDRMSLDASLAAAIDDNLIQFDRVRALAEFAEEARHLTASA
ALPRVLQIAGIEEWISTLPDRAAAEADLGRLFAEASAFDSAETSLREAVGFHGNSLQSFL
GWLADQAERGLDYRPDREGWEVEGIEVSTWHASKGREWPITIVGGMDFSFPERGNTMRAE
FTSFGNFDNVLDSAGLSWFPSFDCPEAQIVFADRRVEQDEREAARALYVALTRARDRLVL
ALPLKEGSPDKRPETMADLLRRRTQLGLGSGTVTACGQQVPALCRTIPKDTEYVYPDASA
DSGVHKVWGVDETSELVARTPWRSSPSSLAAPDGRLGPALTHIDLGVPVPKQKFGSATER
GTAYHLAFRVLAERPEFSARLPAATGLSDDTIKAIEGQASALRAWLGGLGFHQLSFEVPL
QLRADDGSETNAIIDLLAESDDALIIVDHKTGPCPDPNLRFGGYLPQLTAYADLLTERYP
EKPVRFLVVNWMDEGHISIADVAALAAEEAA
NT seq
3156 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaccacatcacgctcgttccggccggcgcaggctcaggcaagacataccgcatc
gagaccacgctcgcagatcttgttgtctcgggcgaggtgtcggcagatcgtatcctcgcg
gtcacattcaccgaagccgcggcctccgatctgcgtacacgtatcaggggtgccctgttg
gccagggggcgcatcgacgaggctctggcaattgacggcgcctatgtcggcacgatccac
gcccttggtctccggctgctgacggagcatacttttgccgcgaaccgctctcctgcaagc
cggctgttatcggactcagagcgagatctgctcatccgccagcagatcggtcgcgctcct
gccctcgctctaatcctaaacgcgcttccgcgctttggctatgtgtgggatcgcaatacg
gacgccactggcgaagaacagctgcgcaaaaaggtcatgcaaaccattgatctgctgcgc
tcgctgggtcagcgcggagccgcctcagagatcattgacccggccatcgccgacctgcgt
gcgacctacggcaccacgaaggactcagcacggctcgaaatggccttgtctcgtgcggtc
aatgccctgctcacttcgtttcccgaaagcatcgccgataccgtttccgccaagacggcg
cgagaagccttcgacaaggatttcgaggcgctccgccgcgcctcgcgaacggacgccctc
ggcagcgattgggcgttgtggcaaagacttcgcaagctgcggctgtcgaacagcaaaacc
aaagcgcccgagggctacgacccgctcgccagtgccgtcgtcgcagccgccgacgagctc
cgctaccatccggggccgctcatggatgccgagaggcatttgacggctttggtccacggc
gcacaggagatcatgagcgcttatgagaacgaaaagcgcgccaggggattgatcgactac
gccgacatgatcgtcgaaactgaagtcctgctacgcacgcgttcggacattctcgatgca
gcgttggccgagatcgactgcgtcgtcatcgatgaattccaggatacaaatcccgtgcag
ttcgcgatgctgtggcgacttgccgcccgcgccccacgcgcgttgatcgtcggcgaccgc
aaacaggcgatcatgggcttccagggcgccgacccgcgtctgtctgaagcactcgacgct
gcacacccagcgagtgtcgacccgctgacccagaattggcgctccgacccgaggatcatg
acgttcgtcaacgcgatcgggccggcgctcttcccgagcggctacgacgcgctcaagtcg
atgcggcccaagagcggcgagacagcactcgaatttatcgaattcgatgggagcaaggcg
aaagttttcgaagggattgccgctcatgcccgcgatctcaccgaccaaaagatcctcatc
attgataagagcacgcaggaaactcgtcaggctcgcccagcggacatcgcgattttggtc
tattcgggtatcgatgcccgaagggtcgcaacatcgctgcgtgacttcgggcttccggtt
cgtcttgccgaggacggctggttcctgtcgcagatcatccaggttgcgcgcgccgcactg
gctctcgtggccgacccaaccgaccggttggcagcgctgctccttttgtcactggggccg
gaccgcatgtctctggatgcttcgctggctgcggcgatcgacgacaacctcattcaattc
gaccgtgtccgcgccctcgcggaattcgcagaggaggctcgccatctaaccgcctccgcc
gcgctcccccgtgtgttgcagatagcaggtattgaagagtggatttcgacgttacccgac
agagcggctgcggaagctgatctcggtcgcctttttgcggaggcaagtgctttcgacagc
gctgagacaagcttgcgtgaagccgtgggtttccatggaaactctcttcaatccttcctc
ggctggcttgccgaccaggccgaacggggccttgactatcggcctgaccgtgagggttgg
gaggtcgaaggcatcgaagtctccacctggcatgcctccaaggggcgtgagtggccaatc
accattgtcggcggcatggatttctcgttcccggaacgcggcaatacgatgcgcgcggag
ttcacatcgttcggcaacttcgacaacgtcttggattctgccgggctgagttggtttcca
tccttcgactgtcccgaggcgcaaatcgtctttgccgatagacgcgtcgaacaggatgaa
cgtgaggccgcccgcgcactttacgttgcgctgacgcgcgcccgtgatcgtctggttctg
gctttgccgctaaaggagggaagccccgacaaacgtcccgagaccatggcagaccttctc
cgccgccggacgcaactcggcctcggatcaggcacggttacggcatgcgggcaacaagtt
ccggcgctctgccgtacgatccccaaggatactgagtacgtctatcccgatgcatcggcg
gattctggcgttcacaaggtatggggcgttgacgagacttccgaattggttgcgcgaacg
ccatggcgcagtagcccctcaagtctcgctgccccggatggtcggcttgggccagcactc
acccatatcgacctcggtgtgccggtcccgaagcaaaaattcggttcggccacggaacgc
ggtaccgcctatcacctcgcctttcgggttcttgccgagcggcccgaattttctgcacgg
ctcccggctgcgactggtctttccgacgatacgatcaaagccatagagggccaggcaagc
gctttgcgggcctggctcggcggtctgggtttccatcaattgagcttcgaggtaccgctt
cagctccgcgccgacgatggctcggaaaccaacgccatcattgacctgctggcggagagc
gacgacgcgctcataatcgtggatcacaagactggtccctgccccgatcccaatttgcgg
tttggagggtatctgcctcaactcacggcatacgccgacttactcacggaacgatacccg
gaaaagcctgtccgcttcctcgtcgtcaattggatggacgaaggccacatcagcattgcg
gatgtcgccgcgctagcagcggaggaagctgcctga
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