Sinorhizobium medicae: Smed_6232
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Entry
Smed_6232 CDS
T00555
Name
(GenBank) transcriptional regulator, NifA, Fis Family
KO
K02584
Nif-specific regulatory protein
Organism
smd
Sinorhizobium medicae
Pathway
smd02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
smd00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Smed_6232
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
smd03000
]
Smed_6232
Transcription factors [BR:
smd03000
]
Prokaryotic type
Helix-turn-helix
Other families
Smed_6232
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
HTH_8
AAA_5
GAF
AAA_2
AAA
AAA_3
nSTAND3
TIP49
GAF_2
AAA_7
Motif
Other DBs
NCBI-ProteinID:
ABR64835
UniProt:
A6UMF5
LinkDB
All DBs
Position
pSMED02:1153011..1154636
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AA seq
541 aa
AA seq
DB search
MRKQDKRSAEIYSISKALIAPTRLDITLNNFVNTLSLVLRMRRGGLEIPASEGEAKITAA
TRSSGSPSAADYTVPKAAIDQIITAGRLVVPDVCNSELFKDQIKWHGIGPTAFIAAAVEV
DHETGGMLWFERAKESGYDYEEEVHLLSMAADLAGRAIRLHRTISRRGRTFAEEQQEQQN
SHDEQSQGFARQRLLKNDGIIGESPALMAAVETAKVVAETNSTVLLRGESGTGKECFAKL
IHQHSTRQKKPFIKFNCPALSESLLESELFGHEKGAFTGAIAQRVGRFESANGGTLLLDE
IGEIPPAFQAKLLRVIQEGEFERVGGTKTLKVDIRLIFATNKDLEMAVRNGEFREDLYYR
ISVVPITLPPLRKRDGDIPLLAKAFLQRFNEENGRGLHFVPSALDHLSRCKFPGNVRELE
NCVRRTATLARAKTITSSDFACQTDQCFSSRLWKGIRCSHCHIATDASAGTTPLVGAPAN
DVPPKDPASAGAASNLIERDRLISALEEAGWNQAKAARILEKTPRQVGYAIRRHGVEVRK
L
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atgcgcaaacaggacaagcggtccgccgaaatttacagcatatcaaaggctctgattgcc
cccactcgtcttgacatcacgctgaacaatttcgtgaataccctctctttggttctgcgc
atgcgccgcggcggactcgagattccggcgtcggaaggagaggcaaagatcacagcggct
acccgcagcagtgggtctccttctgccgctgactatactgtaccaaaggccgcaatagac
caaatcatcactgccgggcggctggtcgtaccagacgtttgcaactcggagctgttcaag
gatcagataaaatggcacggaattggtccgacggccttcatcgctgcggcggtggaggtc
gatcacgaaacgggcggaatgctgtggttcgagcgcgccaaagagtccggttatgactat
gaagaggaggtccacttgctttccatggccgccgatcttgcgggcagggccattcggctt
catcgcactatcagcaggcgtgggcggacatttgccgaagagcagcaagaacagcagaat
tcacatgatgagcagagccagggtttcgcccgccagcggctgctcaagaatgacgggatc
atcggggaaagtcccgccctcatggcggcggtagaaaccgccaaagtcgtggcagagacc
aattcaaccgttctcctcaggggcgaaagcggaactggcaaggaatgctttgcgaagcta
attcaccagcattcgactcggcaaaaaaagccgttcattaagttcaattgccccgcgctg
tctgagagccttctcgaatcagagctgtttggacatgagaaaggtgccttcaccggggct
attgctcaacgagtaggccgtttcgaatcggcgaatggcggaacgttgctgctcgatgaa
atcggcgagatcccgccggcattccaagcaaaactgctacgcgtaatacaggaaggtgaa
tttgaacgagtcggcggcacaaagacgctgaaagtcgacatccggctcatattcgccaca
aataaggatctcgaaatggcggtccggaatggggagttcagggaagacctttactaccgc
atcagtgtggtgcccataactttgccgccgcttaggaaacgcgacggtgacattccgctc
cttgcaaaagctttccttcagcggttcaatgaagagaacggtcgtggtctccatttcgtg
ccgtctgcgcttgaccacttgtcgaggtgcaagttccccggaaacgttcgcgaactggaa
aactgtgtgcggaggactgcaactctcgccagggcaaagacgatcacttcgtcagatttc
gcctgccagacggaccagtgcttttcttctcgcctctggaaaggcattcgctgttcgcat
tgccacattgccaccgatgcgtccgcgggtacgacaccgttggtaggagcgccagccaat
gatgttccgccgaaggatcccgcatccgcaggggcggcatccaatctgatcgagcgcgac
cggttgatcagtgcgctggaggaggccggttggaatcaggcaaaggcagctcgcatcctc
gaaaaaacgccccggcaggtcgggtatgctatacgtcggcatggtgtagaggtgagaaag
ctctaa
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