KEGG   Sinorhizobium medicae: Smed_6405
Entry
Smed_6405         CDS       T00555                                 
Name
(GenBank) type IV secretion/conjugal transfer ATPase, VirB4 family
  KO
K03199  type IV secretion system protein VirB4 [EC:7.4.2.8]
Organism
smd  Sinorhizobium medicae
Pathway
smd03070  Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:smd00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    Smed_6405
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:smd02044]
    Smed_6405
Enzymes [BR:smd01000]
 7. Translocases
  7.4  Catalysing the translocation of amino acids and peptides
   7.4.2  Linked to the hydrolysis of a nucleoside triphosphate
    7.4.2.8  protein-secreting ATPase
     Smed_6405
Secretion system [BR:smd02044]
 Type IV secretion system
  Conjugal DNA-protein transfer (VirB/D) protein
   Smed_6405
SSDB
Motif
Pfam: CagE_TrbE_VirB P-loop_TraG T2SSE FtsK_SpoIIIE AAA_22 TrwB_AAD_bind DEAD AAA_7 Adeno_IVa2 nSTAND_NTPase5 ResIII AAA_29 DUF87
Other DBs
NCBI-ProteinID: ABR64984
UniProt: A6UMV4
LinkDB
Position
pSMED03:complement(65563..68022)
AA seq 819 aa
MLKVVKEELGFGRVAGNERPMSTHIPYLRHVSDTVIGLENGSLLSIIKLDGLFFQTEDQA
ELNMRSVVQNTMIRALGSSRYSLWSTVIRREVETQIGGAFDEPFCDLLNKRYMGQLRHKR
MFTNEIYLTVVRSGMRGALGIGDSLKRLFDKANRDVRIQQTREDVTELEELIGNIVRDLH
KYGARALGITYRRRNDDEAKIEGREENEKGEPYSEPCEFFNAILSCGVPRKMRLPRMGIR
NFVGTSRLHFSKRTMQAQAAVDEDTRFGALLSIKEYPPFTGPGMLDGLLQVNHEFILTQS
FTIADKPIAQERISRLQRQIRASDESGSSVEQDIDYALNSLMNQEAVFGFHHLSLLCLSR
DLPGLSRTVSELGACLTDMNLTWLREDLNLEAGFWAQLPGNHSYIARKAMLSSANFSGLS
SMHNFATGQADRTHWGLPITILETTSQTPYWFNFHRRDIGHFLVTGPTGSGKTVALTFLL
AQAMRVSPTPKAVFFDKDRGAEIFVRAIGGSYEVLSPGTPTGFNPLQLENTGPNREFLLR
LLKAMLRSGDRGDFTQEDEDTLERAIVRLMQEPAAERNLANLAALLVGRSRADANDLHSR
LRPWIEGEKAWLFNAQHDVLSFSGRSVFGFDMTNILGNEDLRTPALMYLYHRLDELLDGN
PVMFFMDEGWQLLMDETFSAFIVDKMKTIRKLNGIVGFGTQSAADIAKAKASHTLIEQSA
TNIHFPNPRADEESYIKRFGLTVKEFNFIKNTPPEKRTFLIKHGNDSVIARLDLSAMPDL
VKVLSGRKETVEECAALREQYGDEPENWLAEFCGWEKAE
NT seq 2460 nt   +upstreamnt  +downstreamnt
atgctgaaagtcgtcaaagaagagcttggattcggccgggtcgccggcaatgagcggccc
atgtcgactcatattccatatctccgacacgtctccgacacagtgatcgggctggaaaac
ggatcgcttctaagcatcatcaaactcgatggactgttcttccagacggaggaccaggct
gagctcaacatgcggtcggtcgtccagaacacgatgatccgtgccttggggtcgagccgc
tattctctttggtcgaccgtgatccggagagaggtcgaaacgcagataggtggcgcgttc
gacgaaccattctgcgacctgttgaacaagcgctacatggggcaactgcgccataagcgc
atgttcacaaacgaaatatacttgacggtcgtgcggtctgggatgcggggcgccctcggc
attggcgactcgttgaagaggctctttgacaaggcaaacagggacgttcggatccagcaa
acgcgcgaagatgttaccgagctcgaggagctgatcggcaacatcgtccgcgatctgcac
aagtatggagcccgggcgctcggaattacctatcgtcgcaggaatgacgacgaggccaag
attgaagggcgtgaagagaacgagaaaggcgagccctactccgaaccctgcgagttcttc
aatgcgatcctgagctgcggtgtgccgcgcaagatgcgcctgccccgcatgggcattcgc
aattttgttggaacgtcgcggctgcatttcagcaagcggacgatgcaagctcaagcggct
gtcgatgaagacacccgctttggggcgctgctgtccatcaaggaatatccgcccttcacc
gggccgggaatgctggacggcctgctacaggtgaaccacgaattcattctgacgcaatcc
ttcaccatcgccgacaagccgatcgctcaagaacgtattagtcgattgcagaggcagatc
agagcctcggacgagtccggtagctcagttgaacaggatatcgactatgcgctcaatagc
ctgatgaaccaggaagccgtcttcggtttccaccatctttcgctcctatgcctctcccgc
gatctcccgggccttagccgcaccgtttccgaactcggtgcttgcctcaccgacatgaat
ctcacctggcttcgcgaggatctgaacctcgaagcgggattttgggcgcaactgcccggc
aatcacagctacattgctcgcaaagcgatgttgtcgagcgcgaatttttccggcctgtcc
tccatgcacaatttcgcgacgggccaggccgatcgcactcattggggactgccgatcacg
atcctcgaaaccacgtcgcagacgccgtactggttcaacttccatcgccgcgacatcggg
cacttcctcgtcacaggaccaaccggctccggtaaaacggtcgctttgaccttcctgctc
gcacaggcgatgcgcgtttcaccgacgccgaaagccgtgttcttcgacaaggatcgcggc
gcggaaatcttcgtaagggcgattggcggttcatatgaggtgctgtcaccgggaacgccg
accggctttaacccgctgcagctcgaaaataccggcccaaaccgcgaattcctccttcgc
ctcttgaaggcaatgctgcgctccggtgatcgcggtgacttcactcaggaagatgaggat
acgcttgagcgggcgatcgtccgcctgatgcaggaacctgcggcggaacgaaacctagcg
aatctggccgccctgcttgtgggtcggtcgcgggcggatgccaatgaccttcactctcgc
cttcgtccttggatcgaaggtgaaaaggcgtggctcttcaacgctcagcacgacgtgctc
tctttctcgggtcgcagcgtcttcgggttcgacatgacgaacatcctcggcaacgaggat
ctccgcacgcccgcgctgatgtacctctatcatcgcctcgacgagctgctcgacggaaac
ccggtcatgttcttcatggacgagggctggcagcttcttatggacgagaccttttcggcg
ttcatcgtcgacaagatgaaaaccatccgcaagctcaacggcattgttggcttcggcacc
cagtccgcggcggatatcgccaaggcaaaagcctcgcatacgctgatcgagcagtcggcg
acgaacattcactttccgaacccgcgggccgacgaagagagctacatcaagcgctttggc
ctgacggtgaaagaattcaacttcatcaagaacactccgcccgaaaaacgaactttcctg
atcaagcacggcaatgactcggtcatcgctcggctggatctttccgccatgcccgatctc
gtgaaggtgctttccggccgcaaggagaccgtcgaggagtgcgcggcacttcgggaacaa
tacggcgacgagcctgaaaattggctggctgaattctgcggatgggagaaggccgaatga

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