Sinorhizobium medicae: Smed_6420
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Entry
Smed_6420 CDS
T00555
Name
(GenBank) Integrase catalytic region
KO
K07482
transposase, IS30 family
Organism
smd
Sinorhizobium medicae
Brite
KEGG Orthology (KO) [BR:
smd00001
]
09190 Not Included in Pathway or Brite
09192 Unclassified: genetic information processing
99976 Replication and repair
Smed_6420
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Gene cluster
GFIT
Motif
Pfam:
HTH_38
HTH_23
rve
HTH_32
HTH_28
HTH_29
HTH_7
HTH_11
HTH_17
HTH_IclR
Sigma70_r4_2
HTH_20
Terminase_5
CENP-B_N
HTH_Tnp_Tc3_1
TnsD
TrmB
Motif
Other DBs
NCBI-ProteinID:
ABR64999
UniProt:
A6U907
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Position
pSMED03:complement(77571..78572)
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AA seq
333 aa
AA seq
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MSQCYLQLTLPDRRRVHQLLERKVPIAEIARQLGRHRSTIYRELKRNTFHDAEFPEYSGY
YSGIANDISKERRRRLRKLSRHAQLRELVIEQLKALWSPEQIAGRLLADGVSAVRVCTET
IYRFIYSKEDYALELYQHLPEGRRKRRPRRSRKPRDGSIPLDCRISQRPDFIADRSQFGH
WEGDLLIFRRDLGEANVTSLVERKSRYTVMIKNGSRHSRPLIDKIIDAFSPLPAFARQSF
TFDRGTEFRGFKALEDGLGARSWFCDPNSPWQKGAVENTNKRIRRFVPSDTDLSAVNQPQ
LVALAHHLNSLPRKCLGYRTPAEVFMAHLRDCG
NT seq
1002 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcagtgctatttgcagctcacccttcccgatcgccgacgcgtgcatcagcttctc
gaacgcaaggtgccgattgctgagatcgcccgccaactcggtcggcatcgatcgacgatc
tatcgtgaactgaagcgcaatacctttcatgatgccgagtttccggaatacagcggctat
tacagcggtattgccaacgacatctcgaaggagcgtcggcgacggctgcgcaagctcagc
cgccacgcgcaattacgcgaactggtcatcgagcagctgaaggcactttggtcgccggag
cagatcgccggccgtctgcttgccgatggtgtgagcgccgtccgcgtctgcaccgagacg
atctatcgcttcatctatagcaaggaagattatgcgctggagctctatcagcatctgccg
gaaggccgtcgtaagcgccgcccacgccgctcccgcaaaccccgtgacggctcgatcccg
ttggactgcaggatcagccaacgccctgatttcattgccgatcgctctcagttcggccac
tgggagggtgatctcctgatcttccggcgcgaccttggtgaagccaatgtcacctcgctg
gtcgagcgcaagagccgctacacggtgatgatcaagaatggcagccgtcactctcgtccg
ctcatcgacaagatcatcgatgccttctcaccgctacccgcctttgcccggcagagcttc
accttcgaccgtggtaccgagtttcgcggtttcaaggctttggaagatggactcggcgcc
aggagctggttttgcgatccgaattcaccgtggcagaaaggcgcggtcgagaacaccaac
aagcgcatccgtcgctttgtgccgagcgatacggacctgtccgccgtcaaccagccgcaa
ctggtcgccctcgcccaccatctcaattcactgcccaggaagtgccttggttaccgcacg
cccgccgaggtcttcatggcccatttgcgcgactgcgggtaa
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