Sinorhizobium meliloti 1021: SMc03835
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Entry
SMc03835 CDS
T00058
Symbol
ligT
Name
(GenBank) Putative 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
sme
Sinorhizobium meliloti 1021
Brite
KEGG Orthology (KO) [BR:
sme00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sme03016
]
SMc03835 (ligT)
Enzymes [BR:
sme01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
SMc03835 (ligT)
Transfer RNA biogenesis [BR:
sme03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
SMc03835 (ligT)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
CAC47797
UniProt:
Q92L65
LinkDB
All DBs
Position
complement(3501158..3501745)
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AA seq
195 aa
AA seq
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MPRLFTALEIPRNAAMSLSLLRGGLPGARWIDVENYHITLRFIGDVDWRTADEIIDRLDR
IERPEFQLQLSGTGAFGSKKPHSVWAGVSIAPEMFALQAEIERICQRIGLPSDPRKFTPH
VTLARLRSSRVEDVVEYLSGRGNFVTAPFTVSRFVLLSSRDSVGGGPYLTEEVFPLHEER
SNLASNEEHPASSVW
NT seq
588 nt
NT seq
+upstream
nt +downstream
nt
atgccgagactgttcaccgccctcgaaattccgcgcaatgcagcaatgagtctttccttg
ctgcgcggaggtcttcccggagctcgctggatcgatgtggagaattatcacatcacgctc
cgcttcatcggcgacgtcgactggcgaaccgccgacgagatcatcgacagacttgaccgc
atcgaacggcccgagtttcagctgcagctgtcgggcaccggcgccttcggctccaagaaa
ccgcattccgtctgggccggcgtcagcatcgctcccgaaatgttcgccctgcaggccgaa
atcgagcgcatctgccagcgcatagggctgccctcggatccgcgcaagttcaccccgcat
gtgacgctggcgcgcctgcgctcctcgcgcgtcgaggatgtcgtcgaatatctctccggg
cgcggcaatttcgtcaccgctcccttcaccgtctcccgtttcgtgctcctgtcgtcacgc
gactcggtcggcggcggcccgtatctcacggaagaggtcttcccgcttcacgaagagcgc
tcgaacctcgcgagcaacgaggagcatcctgcttcgagcgtctggtaa
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