Sulfitobacter mediterraneus: JNX03_05450
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Entry
JNX03_05450 CDS
T07747
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
smed
Sulfitobacter mediterraneus
Pathway
smed03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smed00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JNX03_05450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smed03019
]
JNX03_05450
Enzymes [BR:
smed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JNX03_05450
Messenger RNA biogenesis [BR:
smed03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JNX03_05450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
HEM4
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
QRD43527
LinkDB
All DBs
Position
complement(1115084..1116412)
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AA seq
442 aa
AA seq
DB search
MSDFDMMDLPPKLVERLNEMGLKDPTPIQRQAIPHALNGRDVMGLAQTGTGKTAAFGVPL
VAQMLEMAQRPSPKSVRGLVLAPTRELAQQIMQNLKGFCERTPLKVQMVVGGQSINPQIS
RLAKGVDLLVATPGRLLDLMDRRAVRLDETTFLVLDEADQMLDMGFIHDLRKISSVIPKE
RQTMLFSATMPKLMNEIANSYLRSPIRIEVSPPGKAADKVTQEVHFIAKAEKTNLLIELL
AKHRGERALVFGRTKHGSEKLMKTLVKAGFDAASIHGNKSQGQRDRAIAGFKSGDVSILV
ATDVAARGLDIPDVKHVYNYDLPNVPDNYVHRIGRTARAGKDGAAVAFCAPDEMGELKAI
QKTMGVSIPVASGRPWEAVDAPDKPKGRGRGRGGRPGGGGGGGGNRQQGGGGSGSGAPGK
PGAGRRRRRGGGGSKPGGQKAA
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atgagcgattttgacatgatggacctgccgccaaaactggtggagcgtctgaatgaaatg
ggtctcaaagacccgacaccgatccagagacaggcaattccgcatgcgctgaacgggcgc
gatgtgatggggctggcgcaaaccggcaccggcaagacggcggcttttggtgtgccgctt
gtggcgcagatgcttgagatggcgcagcggcccagcccgaaatccgtacgcggtctggtt
ctggccccaacgcgggagctggcccaacagatcatgcagaacctcaaagggttttgcgaa
cgcacgcctttgaaggtgcagatggttgtcggcggccagtcgatcaatccacaaatcagc
cgcctcgccaaaggggtggatctgctggtggccacacctggccggctgctggatctgatg
gaccgccgtgccgtgcggctggacgaaaccacttttctggtgctggacgaggcggaccag
atgctcgacatgggctttatccacgatctgcgcaaaatctcgtcggtgatccccaaggaa
cgccagaccatgctgttctcggcgaccatgccgaaactgatgaacgagatcgccaacagt
tatctgcgcagcccgatccgcatcgaagtgtcccctccgggcaaagcggcagacaaagtc
acccaagaggtgcatttcatcgccaaggccgagaaaaccaatctgttgatcgagcttctg
gcaaaacaccgcggtgaacgggcgctggtctttggccgcaccaagcacgggtctgaaaag
ctgatgaaaacgctggtgaaggcgggttttgatgcggcatccatccatggcaacaaatcc
cagggtcaacgtgaccgcgccatcgcgggcttcaagtccggcgacgtgtcgattctggtg
gcaacagatgttgcggcacgcggcctggatattccggacgttaaacatgtctacaattac
gacctgccaaacgtgccggacaattatgtgcaccgcatcggccggaccgcccgcgcaggc
aaagacggcgcggccgtggccttttgtgcacccgatgagatgggcgaattgaaagcgatc
cagaaaaccatgggcgtcagcatccctgtggcctcaggtcgcccgtgggaggccgttgac
gcccccgacaaacccaagggcaggggccgcggacgcggtggtcgcccagggggcggcggc
ggtggtggcggcaatcgccaacaggggggcggcggctccggcagcggcgcacccggcaaa
cccggcgcaggccgcagacgccggcgcggcggcggtggcagcaaaccgggcggtcagaaa
gccgcctga
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