Sulfitobacter mediterraneus: JNX03_07135
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Entry
JNX03_07135 CDS
T07747
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
smed
Sulfitobacter mediterraneus
Pathway
smed03410
Base excision repair
smed03430
Mismatch repair
smed03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
smed00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
JNX03_07135 (recJ)
03430 Mismatch repair
JNX03_07135 (recJ)
03440 Homologous recombination
JNX03_07135 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smed03400
]
JNX03_07135 (recJ)
DNA repair and recombination proteins [BR:
smed03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
JNX03_07135 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
JNX03_07135 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JNX03_07135 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Prok-RING_1
Motif
Other DBs
NCBI-ProteinID:
QRD43840
LinkDB
All DBs
Position
1462296..1464035
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AA seq
579 aa
AA seq
DB search
MHFLGVEASLTGRRWVGPGVEVERAAELIMQRSALPMAVCQVLARRGVPAEEAEAFLAPA
LRDLLPDPRSLKDMEQAAVRFLSALKNREKIAVFADYDVDGGSSAALLLIWLRQMGHNAT
LYVPDRIDEGYGPNEEAMAALAADHDLIICVDCGTLSHGPIAAAKGADVIVLDHHLGGET
LPDALAVVNPNRQDEDGACAHLCAAAVVFLMLVEAGRQLREAQVKGPDLMAMLDLVGLAT
VADVAPLTGVNRAFVRQGLRVMARRERPGLAALADVARMDTAPTAYHLGFLLGPRINAGG
RIGQADLGARLLASDDPHETAALAERLDTLNTERREVEASVRAAALEQAESRGFDAPLVW
ASGPGWHPGVVGIVASRLKEASNRPSIVIGVEDGIGKGSGRSVSGIDLGAPIQRLAAEGL
LIKGGGHKMAAGLTVAEDKLEAAMERLGELLAKQGAHLAGPADLSVTGLMMPEAATVELA
EMIEQAGPFGSAAPAPRYVFAEMKIFFAKRVGESHLKISFGDGLGAKMDAIAFGAFDGPL
GPALENHNGARFHLAGRLDINTWRGRQTVQLRLEDAAQA
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
gtgcattttctaggcgtagaggcttctttgacgggcagacgctgggttgggcccggcgtc
gaggtggaacgcgcagcagagctgatcatgcaacgcagtgccctgcccatggcggtctgt
caggttctggcccggcgcggtgtgcccgcagaagaggcggaggcgttcttggccccggcc
ctgcgcgatctgctgcctgatccgcgatctttgaaagatatggaacaagccgctgtgcgg
tttctgtctgccctgaaaaaccgcgaaaagatcgcggtctttgccgattatgatgtcgac
ggcggcagctctgccgcacttttgctgatctggttgcggcagatgggccataacgcgacc
ctctatgtccccgaccggattgatgaaggctacggccccaatgaagaggccatggcggca
cttgctgcggatcatgatctgatcatctgcgtcgattgtggcacgctgtctcatggcccg
attgccgccgccaagggcgcggacgtgattgtgctggatcatcacttgggcggtgaaacc
ctgcctgatgcactggctgtcgtaaacccgaaccgtcaggatgaggacggtgcctgcgcc
catctttgtgcggcggcggtggtgttcttgatgttggttgaggccggacggcaattgcgc
gaagcgcaggtcaaaggcccggacctgatggcaatgctggatctggtggggctggcgaca
gtggccgatgtggcgccgctgaccggtgtgaaccgtgcttttgtgcgtcaaggtctgcgg
gtgatggcacggcgcgagcggcccggcctggccgcgctggccgatgtggcgcggatggac
accgcgccgaccgcctatcaccttgggttcctgctgggaccgcggatcaacgcaggcgga
cgcattgggcaagccgatctgggtgcgcggcttctggcctcggatgatccgcatgaaacg
gctgccttggccgaacggctcgacaccttgaataccgaacgccgcgaagtcgaagcttcg
gttcgcgccgctgcgctggagcaggccgaatcccgtggatttgatgcaccgctggtctgg
gcctccggccccggctggcaccccggcgttgtgggcattgtggcatcacgcctgaaagaa
gcctccaaccgcccctcgatcgtcattggtgtcgaggatggcatcggcaaaggttccggg
cgctccgtctccggcattgatctgggcgcccccattcaacggctggccgccgaagggttg
ttgataaaaggcggcggtcacaagatggccgctggcctgaccgtggccgaagacaagctg
gaagcagccatggaacgcctgggcgagttgctggcaaaacagggggcacatctggccggc
cctgccgatctgtcagtgaccggattgatgatgccggaggctgcaactgtcgagctggcc
gaaatgatcgagcaagccggcccatttgggtccgccgcgcctgccccacgatatgttttc
gccgagatgaagatcttttttgccaagcgggttggcgaaagccacctcaagatcagcttt
ggcgatggattgggcgccaagatggacgccatcgccttcggcgcgtttgacggcccgctt
ggaccggcgctggagaatcacaatggcgcaaggttccacctggcgggacgtctggacatc
aacacatggcgcggtcgccagaccgtacaattgcgtctggaagatgccgcgcaggcttaa
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