Sulfitobacter mediterraneus: JNX03_10760
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Entry
JNX03_10760 CDS
T07747
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
smed
Sulfitobacter mediterraneus
Pathway
smed03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
smed00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JNX03_10760 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smed03021
]
JNX03_10760 (rpoC)
03400 DNA repair and recombination proteins [BR:
smed03400
]
JNX03_10760 (rpoC)
Enzymes [BR:
smed01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JNX03_10760 (rpoC)
Transcription machinery [BR:
smed03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JNX03_10760 (rpoC)
DNA repair and recombination proteins [BR:
smed03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JNX03_10760 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
Apocytochr_F_C
DUF7567
Motif
Other DBs
NCBI-ProteinID:
QRD41076
LinkDB
All DBs
Position
complement(2183804..2188051)
Genome browser
AA seq
1415 aa
AA seq
DB search
MNQELTNNPFNPLTPPKVFDEIKVSLASPERILSWSFGEIKKPETINYRTFKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYRGVVCEKCGVEVTLQKVRRERMGHIELAAPVAHIWFLK
SLPSRIGLMLDMTLRDLERVLYFENYVVIEPGLTDLTYGQMMTEEEYMDAQDAYGMDAFT
ANIGAEAIREMLAAIDLEAEADQLRADLKEATGELKPKKIIKRLKVVESFLESGNRPEWM
VLTVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKR
MLQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVT
GPELKLHQCGLPKKMALELFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIR
EHPVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNVLSPANGAPIIVPSQDMILGLYYTTLARDGMVGEGKVFGTVDEVQHAL
DAGEVHLHSKIKARIKQIDDEGNEVFVRFDTTPGRVRLGALLPLNTKAPFDLVNRLLRKK
EVQQVIDTVYRYCGQKESVIFCDQIMTMGFREAFKAGISFGKDDMLIPETKWTLVDETRD
QVKDFEQQYMDGLITQGEKYNKVVDAWSKCNDKVTDAMMGSISAERTDENGAEMEPNSVY
MMAHSGARGSVTQMKQLGGMRGLMAKPNGDIIETPIISNFKEGLTVLEYFNSTHGARKGL
SDTALKTANSGYLTRRLVDVAQDCIVRMHDCGTETAITAEAAVNDGEVVSSLAERLLGRV
AADDILVPGTDEVLVPAGTLIDERLSDAIEEAGVQSTRIRSPLTCEAEEGVCAMCYGRDL
ARGTLVNQGEAVGIIAAQSIGEPGTQLTMRTFHIGGVAQGGQQSFLEASQEGKIVFENAQ
TLENAAGEIMVMGRNMKLSIQGDDGEERASHKVGYGSKLFVKDGQSISRGDKLFEWDPYT
LPIIAEKSGTTKFVDLVSGIAVRDETDDATGMTQKIVIDWRAAPKGNELKPEIILVDANG
EPVRNDAGNPVTYPMSVDAVLSIEDGSEIQAGDVVARIPREGAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGYVRFGKDYKNKRRIAIESSDDADVKVEYMVPKGKHIPVAEGDFVQ
KGDYIMDGNPAPHDILSIMGVEALADYMIDEVQDVYRLQGVKINDKHIEVIVRQMLQKWE
IQESGDTTLLKGEHVDKQEFDHANEKALSKGGRPAKGEPILLGITKASLQTRSFISAASF
QETTRVLTEASVQGKRDKLVGLKENVIVGRLIPAGTGGATQQMRKVAQDRDNVVIEARRE
EAEAAAALAAPTASTDDIVGGDVFDTVITDDDSRS
NT seq
4248 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaactgacaaacaacccgttcaacccgctcacaccacccaaggtgtttgac
gagatcaaagtctcgctggcatcgccagagcggattttgagctggtctttcggtgagatc
aagaaaccagaaaccatcaactatcggacgttcaagccagaacgtgacggtttgttctgt
gcgcgtatctttggcccgatcaaagattacgaatgcctctgcggcaaatacaagcgcatg
aaatatcgcggcgttgtctgcgaaaaatgcggggtcgaagtgaccctgcaaaaggtccgc
cgcgagcgtatgggccatatcgaactggccgcgcctgttgcgcatatctggttcctcaag
tcgcttccgtcccggatcggcctgatgctggacatgaccctgcgcgatctggagcgggtt
ctctatttcgagaactacgtggtgatcgagcccggtctgacggatctgacctatggccag
atgatgaccgaagaagaatatatggatgcccaagatgcttacggcatggatgctttcacc
gccaatattggcgctgaggcgatccgcgagatgctggcggcgattgatctggaagccgaa
gcagaccagctgcgtgctgatctgaaagaagccacaggcgagttgaagccgaagaagatc
atcaagcgtctgaaggttgtggaaagcttcctggaatccggcaaccgcccggaatggatg
gtgctgaccgtgatcccagtgatcccgccggaactgcgcccgctggtgccgctggatggt
ggccgttttgcgacgtcagatctgaacgatctgtatcgccgagtgatcaaccggaacaac
cgtctgaagcgtctgatcgaactacgtgcgcctgatatcatcgtccgcaacgaaaagcgg
atgttgcaggaatctgttgatgcattgttcgacaacggccgccgtggccgcgtgatcacg
ggcgccaacaagcgtccgctgaaatcgctgtctgacatgctgaagggcaagcaaggccgt
ttccgccaaaaccttttgggtaagcgcgtcgacttctccggtcgttcggtgattgtgacg
ggtccagaactgaagctgcatcaatgcgggctgccgaaaaagatggcactggagctgttc
aagccgttcatctacagccgtcttgaggccaaaggtttgtcttctacagtgaagcaagcc
aaaaaactggtcgaaaaagagcgtcccgaagtctgggacatcctcgacgaagtgatccgc
gaacaccctgtcatgctgaaccgtgcgccgacgctgcaccgtttgggcattcaggcgttt
gagccggttctgatcgagggtaaagccatccagctgcacccgctggtgtgttccgccttc
aacgccgactttgacggtgaccagatggcggttcacgtcccgctgtccctcgaagcacag
cttgaagcacgtgttctgatgatgtccacgaacaacgttctgtcgcctgcaaacggtgct
ccgatcatcgttccatcgcaggatatgatcttgggtctctactacacgacccttgcgcgt
gacggcatggttggcgaaggcaaagtgttcggcaccgtcgatgaggtgcagcatgcgctt
gacgccggtgaagtgcatttgcactccaagatcaaagcgcggatcaaacagatcgacgac
gaaggcaacgaagtgttcgtacgctttgacaccacgccgggccgtgtccgtttgggcgct
ttgctgcctctgaacaccaaggcaccttttgatctagtgaaccgtctgctgcgtaagaaa
gaagtgcagcaggtcatcgatacggtctaccgttactgtggtcagaaagaatctgtcatc
ttctgtgaccagatcatgaccatgggattccgtgaagcgttcaaggctggcatttccttc
ggcaaagacgacatgttgatcccggaaaccaaatggacgctggttgatgagacacgcgat
caggtcaaagactttgaacagcagtacatggacggcctgatcacccagggtgaaaagtac
aacaaagttgtcgatgcctggtcaaagtgtaacgacaaggttaccgacgcgatgatgggc
tcgatctccgctgaacggacggacgagaacggcgccgaaatggagccgaactcggtctac
atgatggcccactccggtgcgcgtggttctgtaacgcagatgaaacagctgggcgggatg
cgcggcttgatggccaagccgaacggcgacatcatcgagaccccgatcatctcgaacttt
aaagaaggtctgaccgttctggagtacttcaactccacccacggtgcccgtaagggtctg
tcggacacggctttgaaaacagcgaactccggttacctgacacgccgtctggtggacgtt
gcgcaggactgcatcgtacgtatgcacgactgtggaaccgaaaccgcgatcactgcagaa
gcggccgtgaacgatggtgaggttgtttcctcgctggccgagcgtttgctgggccgtgtg
gctgcggacgacattctggtgccgggcacggatgaagtgctggtgcctgcaggcacgctg
atcgacgaacgtctgtcggatgcgatcgaagaggcgggtgttcaatccacgcgcatccgg
tcgccgctgacctgcgaggccgaagagggtgtttgcgccatgtgttatggccgtgacctt
gcacgcggtactttggtgaaccaaggcgaggcggtgggtatcatcgcggcgcaatccatt
ggtgagccgggtacacagctgacgatgcggacgttccacatcggcggcgttgcgcagggt
ggccagcagtcgttcctcgaagcctctcaggaaggcaagatcgtgtttgaaaacgcacag
acccttgagaacgccgccggcgagatcatggtcatgggccggaacatgaagttgtccatc
caaggtgacgacggggaagagcgtgccagccacaaggttgggtatggctccaaactgttt
gtcaaagacggacaatcgatttctcgtggcgacaagctgtttgaatgggatccttacact
ctgccgatcatcgctgagaaatccggtacaaccaaatttgttgatctggtttcgggcatt
gctgtccgtgacgagaccgatgatgcgaccggtatgacccagaaaatcgtgatcgactgg
cgtgcagcgccaaaaggcaacgagctgaagcctgagatcattctggttgatgcgaacggt
gagcctgtgcgcaatgatgcgggcaacccagtgacctatccgatgtctgttgatgcggtt
ctgtccattgaggacggttctgaaattcaggccggtgacgttgttgcgcgtatcccgcgt
gagggtgccaaaaccaaggacatcaccggtggtctgccacgtgtggccgaactctttgag
gcacgccgccccaaagatcacgccatcatcgcggaaatcgatggttatgtgcgctttggc
aaggactacaaaaacaagcgccgtatcgcgattgagtcctctgacgatgccgacgtgaag
gttgaatacatggtgccgaagggcaaacacattccggttgcggaaggtgattttgtccag
aagggcgattacatcatggacggcaaccccgcgccgcacgacatcctgtcgatcatgggt
gttgaggccctggccgattacatgatcgacgaagtgcaggatgtttatcgccttcagggt
gtgaagatcaacgacaagcatatcgaagtgatcgtgcgccagatgttgcagaaatgggag
atccaggaatctggtgacaccacgttgctcaagggtgaacacgtggacaaacaggaattc
gatcacgctaatgaaaaggcgctgtcgaaaggtggccgtcctgccaagggcgaaccgatc
ctgcttggcatcaccaaggcgtcgttgcagacccgtagctttatctctgcggcgtccttc
caggaaaccacgcgcgttctgaccgaagcgtcggtgcagggcaaacgtgacaagctggtt
ggcctcaaagagaacgtcatcgtgggtcgtctgatcccggcgggcaccggtggtgcaacg
cagcagatgcgcaaagtggcacaagatcgcgacaacgtcgtgatcgaagcccgccgcgaa
gaagccgaagccgccgccgcgcttgccgcgccaacggccagcacggatgacatcgtgggt
ggtgacgtgtttgacacggtcatcacggacgacgacagccgcagctga
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