Sulfitobacter mediterraneus: JNX03_11895
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Entry
JNX03_11895 CDS
T07747
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
smed
Sulfitobacter mediterraneus
Pathway
smed03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smed00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JNX03_11895
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smed03019
]
JNX03_11895
03009 Ribosome biogenesis [BR:
smed03009
]
JNX03_11895
Enzymes [BR:
smed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JNX03_11895
Messenger RNA biogenesis [BR:
smed03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JNX03_11895
Ribosome biogenesis [BR:
smed03009
]
Prokaryotic type
rRNA helicases
JNX03_11895
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
ThylakoidFormat
Motif
Other DBs
NCBI-ProteinID:
QRD41286
LinkDB
All DBs
Position
2388251..2390311
Genome browser
AA seq
686 aa
AA seq
DB search
MIQTIADALAQQGYETLTAVQEAVTDPALAQADLLVSAQTGSGKTVGFGLAIAPTLLDGA
EHFGPAAAPLALVIAPTRELAMQVSRELSWLYGKAGAIVTTCVGGMDQRTERRALDRGVH
VVVATPGRLCDHIKRGNIDLGDLRAVVLDEADEMLDLGFRDELEFILSEAPEDRRTLLFS
ATVPAAIAKLAQSYQRDAQRISTVGEAKQHADIEYRALNVHPRDTENAIINVLRFYEAKN
AIVFCNTRAAVARLTAKFTNRGFSVVALSGELTQSERTNALQALRDGRARVCIATDVAAR
GIDLPNLELVIHADLPSNSDTLLHRSGRTGRAGRKGVSALIVPPKMKTKANRLLGWAKLK
AEWAAAPTAAEVNAADEARLLGDDAWSAPIPEDAEAFVANLVEQFSAEQLATAFVNLYRA
RASAPEDLTDPGERGDDKPRPAFGPSVWFSVSAGRNDGAEPRTLLPMLCRLGDLTKDDIG
AIRVQPSHSFVEILASSATKFVNALGPDMKAEGGAVVTQLDSPPDLPRGPKPGGPKRGPK
PGGKPHRKSYDSDAPSEPRKPRKPYREDPVAEVRAERSEKPRFDKPRGGPKGERPPKSHK
TDRSPMKPGAKPKPKSNGEAPGKPKAKAVWKKEKPATEAPRKPKGAPKKSASEPSSYKRA
SDPSKRFSPPNKVGKQGGKAGPKRGK
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
ttgatccagaccatcgcagatgcgctagcccaacagggctatgaaactcttaccgccgtt
caggaggccgtgaccgatccggcgcttgcccaggccgaccttttggtctcggcccagacc
ggctctggcaagaccgtcggctttggcctggccatcgcgccgaccttgctggacggggct
gaacatttcggcccggccgccgcgcccttggcattggtgatcgcaccaacacgcgaattg
gccatgcaggtcagccgcgagctcagctggctctatggcaaggccggcgcgattgtcacc
acctgtgttggcggcatggaccaacgcaccgaacgccgcgccctggaccggggtgttcat
gtggttgtggccacgccggggcgtctgtgcgaccacatcaaacgcggcaacatcgacctt
ggcgatctgcgggccgttgttttggacgaagcagatgaaatgctcgatctcgggttccgc
gacgagctggaattcatcctgtccgaagcgcccgaagaccgccgcaccctgctgttttcg
gccaccgtgccggccgcaattgccaagctcgcgcagtcctaccaacgtgacgcgcaacgc
atcagcaccgtcggcgaagccaaacagcacgcggatatcgaataccgcgccctgaacgtg
cacccgcgtgacacggaaaacgctattatcaacgtgctgcggttttacgaggccaagaat
gccatcgttttctgcaacacccgcgccgctgtggcgcggctgactgccaaattcaccaac
cgcggcttttctgttgttgccctgtctggggagctgacccaatcggaacgcaccaatgcc
ttgcaagccctgcgtgatggccgggcgcgggtctgtatcgccaccgatgtggccgcacgc
gggatcgacctgcccaatctggagctggtaattcacgccgatctgccgtccaactcggac
acccttctgcaccgctctggccggaccggccgtgctgggcgcaagggggtttcggcgctg
atcgtcccgcccaagatgaaaacaaaggccaaccgcctgctgggttgggccaaactgaaa
gccgaatgggccgccgcacccaccgccgccgaggtgaatgccgccgacgaagccagactg
ctgggcgatgatgcatggtctgcgcccatccctgaagatgcagaagcttttgtggccaac
ctggtcgagcaattcagtgccgaacaactggcaaccgcatttgtgaacctataccgcgca
cgtgcctctgcccccgaagatctgaccgatccgggcgaacgcggcgacgacaaaccccgc
cccgcctttgggccttctgtctggttttcggtctctgcaggccgcaatgatggggcagag
ccgcgcaccttgctgccgatgctgtgccgcttgggtgatctgaccaaagacgacattggc
gcaatccgcgtacagccaagccacagctttgttgaaattctggcctcctccgcaaccaag
tttgtcaatgctcttgggccagacatgaaagccgaaggcggcgctgttgtcacccagctc
gacagccctccggacctgccgcgcggtccaaagccaggcggcccgaaacggggtcccaag
ccgggtggaaagccgcatcgcaaatcttacgattccgacgcaccatccgaaccgcgcaag
ccacgcaaaccctaccgcgaggatccggtggccgaagttcgcgcagagcgcagtgaaaag
cccaggttcgacaaaccgcgcggcggccccaagggcgagcgcccgccgaagtctcacaaa
accgaccgcagcccgatgaagcccggcgccaagccaaagccaaaatcaaatggcgaagcc
cccggcaagcccaaggcaaaagccgtctggaagaaagagaaaccagcgaccgaggcgccg
cgcaaacctaagggtgcgccgaaaaagtcggcatcggagccaagcagctacaaacgcgca
agcgatccgtccaagcgtttctcgccgccaaacaaggtcgggaaacaaggcggtaaagcc
ggacccaaacgcggcaaataa
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