Sulfitobacter mediterraneus: JNX03_14940
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Entry
JNX03_14940 CDS
T07747
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
smed
Sulfitobacter mediterraneus
Pathway
smed03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smed00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JNX03_14940 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smed03019
]
JNX03_14940 (pnp)
03016 Transfer RNA biogenesis [BR:
smed03016
]
JNX03_14940 (pnp)
Enzymes [BR:
smed01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
JNX03_14940 (pnp)
Messenger RNA biogenesis [BR:
smed03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
JNX03_14940 (pnp)
Transfer RNA biogenesis [BR:
smed03016
]
Prokaryotic type
tRNA degradation factors
JNX03_14940 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
S1_RRP5
KH-I_KHDC4-BBP
NNH1
Motif
Other DBs
NCBI-ProteinID:
QRD41858
LinkDB
All DBs
Position
complement(3022384..3024519)
Genome browser
AA seq
711 aa
AA seq
DB search
MFNVTTKSIQWGEETLTLETGKVARQADGSVIATLGETSVMANVTYARQQKPGQDFFPLT
VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSH
DLVNDPDMVAMIAASAALTISGAPFMGPIAGARVGYEDGEYILNPTVDDMQDLRLNPDQR
LDLVVAGTKDAVMMVESEAYELTEEEMLGAVKFAHDSIQPVIDLIIDLAEDAAKEPFDFQ
PVDYSELSAAVAKAGEKEMRAAFAIADKQERTAAVSAARETIKAALSEEQLADANLGSAM
KGLEASILRGDVVKTGKRIDGRKTDEIREIVSQTGLLPRTHGSALFTRGETQGLVVTTLG
TGDDEQFIDALHGNFKSNFLLHYNFPPYSVGEVGRVGPPGRREIGHGKLAWRALQAVLPA
ATDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKSAVAGVAMGLILEEDGSYA
ILSDILGDEDHLGDMDFKVAGTEAGITSLQMDIKIAGITQEIMEKALAQAKEGRIHILGE
MNKAISGAADFSVHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAKVDINDEGIIKI
ASPNGDSIKKAYDMIHSIVAEPEEGMVYTGTVVKIVDFGAFVNFFGKRDGLVHVSQIENR
RLNHPSDVLKEGQEVKVKLLGFDDRGKVRLSMKVVDQETGEEIKKEEKAED
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgtttaatgtaacgacaaaatccattcagtggggcgaagagacgctcacactggaaaca
ggtaaagtggcccgtcaggcagacggttccgtcatcgcaacgctgggcgaaaccagcgtg
atggcaaacgtcacctatgcacgacagcaaaagcccggacaggactttttcccgctgacc
gtccactaccaagagaaatattacgccgccggcaaagtgccaggcggttttttcaaacgt
gaggcacgccccaccgagaaagaaactctgacagcccgcctgatcgaccgtccgatccgt
ccgctgtttgtccccggcttcaaaaacgaagttctggtgatgtgtactgttctgtctcac
gatctggtcaatgacccggacatggttgcaatgatcgccgcctctgccgcactgaccatc
tctggtgcgccgttcatgggcccaatcgcgggcgcccgcgtcggttatgaggatggtgaa
tatatcctgaacccaaccgtggacgacatgcaggacttgcgcctgaacccggatcagcgt
ttggatctggttgtggccggcaccaaagacgccgtgatgatggttgaatccgaagcctat
gaactgaccgaagaagaaatgctcggcgcggtgaaatttgctcatgacagcattcaacct
gtcatcgacctgatcatcgatctggccgaagatgccgcgaaagagccgtttgacttccag
cctgtagactactccgagttgtccgcagccgtggccaaagcaggcgaaaaagaaatgcgc
gccgcttttgcaatcgccgacaagcaagagcgcaccgccgctgtttccgctgcgcgtgaa
acgatcaaagccgcattgagcgaagagcaattggcagatgccaacctcggttccgcgatg
aaaggtcttgaggcctccatcctgcgcggtgacgttgtcaaaaccggcaagcgtatcgac
ggccgcaagaccgacgagatccgcgaaatcgtttcgcaaaccggtctgctgccacggacg
cacggctctgccctgttcacacgcggcgaaactcagggtctggttgtgaccacgctgggc
accggtgacgacgaacagttcatcgacgcgctgcatggcaacttcaaatccaacttcctg
ctgcattataacttccctccctattcggtgggtgaagttggccgcgtgggccctcccggc
cgtcgtgagatcggtcacggcaaacttgcatggcgtgcgcttcaggcggttctgcctgcg
gctaccgacttcccctacaccatccgcgttgtgtccgagatcaccgaatccaacgggtcg
tcctccatggcgtctgtctgcggtggctccttgtccatgatggacgcgggcgttccgctg
aaatctgctgtggcaggtgttgcgatgggtctgatcctcgaagaagacgggtcttacgcg
atcctgtccgacattctgggcgatgaagatcacctcggtgatatggactttaaagtggcc
ggtaccgaagcagggatcacgtccttgcagatggacatcaagattgccggtatcacgcaa
gagatcatggaaaaagcactggcgcaggccaaagaaggccggatccatatccttggtgag
atgaacaaagccatctccggcgcggcagatttctctgttcacgcaccgcgcatcgaaacg
atgcagatcccaacggacaaaatccgtgaagtgatcggttcgggcggtaaagtcatccgt
gagatcgttgaagtgtccggcgccaaggtcgacatcaacgacgaaggcatcatcaagatc
gcgtcgccaaacggtgacagcatcaagaaagcctacgacatgatccattcgatcgtggca
gagccagaagaaggcatggtctacaccggcacggttgtgaaaattgtcgacttcggtgca
ttcgtgaacttctttggcaagcgcgacggcctggtgcatgtgtcccagatcgaaaaccgc
cgcctgaatcatccttcagatgttcttaaggaaggccaggaagtgaaagtgaagcttttg
ggctttgacgatcgcggcaaggtgcgcctgtccatgaaggttgtggatcaggaaaccggc
gaagagatcaagaaagaagaaaaagcagaggattga
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