Sulfitobacter mediterraneus: JNX03_17820
Help
Entry
JNX03_17820 CDS
T07747
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
smed
Sulfitobacter mediterraneus
Pathway
smed03030
DNA replication
smed03430
Mismatch repair
smed03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
smed00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JNX03_17820 (dnaE)
03430 Mismatch repair
JNX03_17820 (dnaE)
03440 Homologous recombination
JNX03_17820 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smed03032
]
JNX03_17820 (dnaE)
03400 DNA repair and recombination proteins [BR:
smed03400
]
JNX03_17820 (dnaE)
Enzymes [BR:
smed01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
JNX03_17820 (dnaE)
DNA replication proteins [BR:
smed03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
JNX03_17820 (dnaE)
DNA repair and recombination proteins [BR:
smed03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
JNX03_17820 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
QRD42397
LinkDB
All DBs
Position
3626408..3629914
Genome browser
AA seq
1168 aa
AA seq
DB search
MTDTPRFIHLRTHSEYSLLEGALRLKKLPGMCRDMGMPAMALTDTNNMFAALEYSVAMAG
AGVQPIIGCQVDLAYVQVQPGERPRDPAPVVLLAQTETGYENLMKLNSCLYIDKGGALPE
VTLDELETFSADVICLTGGADGPVGQLLQGGQRPAAEALMTRLHGAFGNRLYVELQRHPG
EDGLPENERLTERGFVEMAYDMDIPLVATNDVYFPDPKMYEAHDALICISEGAYVDQQDP
RRRLTAQHYFKTPSEMVTLFADLPEALANTVEIAKRCAFMAYRRAPILPKFADDEIEELK
RQSHEGLKARLAVIPHATSVEEYEKRLDFELGIIEGMGFPGYFLIVADFIKWAKDHDIPV
GPGRGSGAGSLVAYALTITDLDPLRYQLLFERFLNPERVSMPDFDIDFCMDRREEVIRYV
QEKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSKMIPVEGVKPVSIEKALA
DEPRLREEAKNEEVVARLLEYGQQVEGLLRNASTHAAGVVIGDRPLDALVPLYQDPRSDM
PATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDQIKASGRHLHIAADGSELFEPPEGLI
DDIATIPLDDEASYKLYASAKTVAVFQVESSGMMDALKRMKPTCIEDIVALVALYRPGPM
ENIPTYCEVKNGKRERESVHPSIDHILEETQGIIVYQEQVMQIAQVMAGYSLGGADLLRR
AMGKKIAEEMAKERPKFEKGAMENGVDKKKAAEVFDLLEKFANYGFNKSHAAAYAVVSYQ
TAWLKANHPVEFMAGVMNCDIHLTDKLAINFEEVRKRLELPWVPPCVNRSDATFKVVDGA
LVYALGALKNVGVEAMKLITDGRTVDGVDKPFATLFDLARRVDLKRVGKRPLEMLARSGA
FDQLDPNRRRVFQALDPLVNYSAAIHEQKASNQVSLFGEAGDDLPEPRMLPCDDWLPAER
LTEEFKAVGFYLSGHPLDDYMGPLKRKGVMTLDEVTAKAEGGALVAKIAGVVAGRQERKS
ARGNRFAFAQLSDTTGGYEVTLFSDTLEAAREHLETGSKVVVTVEATMESDQLKLLGRSV
TPIDAAVADAGSMGLRVFIDEPAAIAAVAGVLEGAPQAIRGRGPVQLCLMDPSLPGEVEV
DLGREYPVTPQIKGAIRSLGGVLEVQEI
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacacaccccgattcattcacctgcgcacccattccgaatattccctgctcgaa
ggggcgctgcggctgaaaaagctgcccggcatgtgccgcgatatgggcatgcccgcgatg
gccctcacagacaccaacaacatgttcgcggcgctggaatattccgttgccatggccggt
gcgggtgtgcagccgatcatcggctgtcaggtcgatctggcctatgtacaggtgcaaccg
ggcgagcggccccgcgatcccgcgcctgtggttcttctggcccagaccgagacgggttac
gagaacctgatgaagctgaactcctgtctctacatcgacaagggcggtgcgctccccgag
gtgacgctggacgagttggagacattcagcgccgatgtgatctgcctcacggggggggcg
gatggcccggtgggtcaactgctgcaaggcggccaacgccctgccgccgaagcgctgatg
acgcgcctgcacggcgcttttggcaaccggctgtatgtcgagttgcagcgccatccggga
gaggacggcctgcccgaaaacgagcgcctgaccgaacgcggctttgtcgagatggcctat
gacatggacattccgctggtcgccaccaacgatgtctatttccccgaccccaagatgtac
gaggcgcacgacgccctgatctgtatttccgaaggggcttatgtggatcagcaagatccg
cgccgccgcctgaccgcgcagcattacttcaaaacgccctccgaaatggtgacgctcttt
gccgatctgcccgaggcactggccaatacggtcgaaatcgcaaaacgctgcgccttcatg
gcctatcgccgggcgccgatcctgcccaaatttgccgatgacgagatcgaagagctcaag
cgccagtcccacgaagggctcaaggcgcggctggccgtcatcccccatgccaccagtgtc
gaggaatatgaaaaacgcctcgattttgagctgggcatcatcgagggcatgggctttccc
ggctatttcctgatcgttgcggattttatcaaatgggccaaggatcacgacattccggtg
gggccggggcgcggctctggtgcgggctcgctggtggcctatgccctgaccatcacggat
ctggatccgctgcgctatcaactgctgtttgaacggtttctcaatcccgaacgggtttcg
atgcccgacttcgatatcgacttctgcatggaccgccgcgaagaggtgatccgctacgtg
caggagaaatatggccgcgacaaggtgggccagatcatcacattcggtgccctcctgtcc
aaggcagcggtgcgcgatatcgggcgggtgctgcaaatgccatatgggcaggtcgaccgc
ctgtccaaaatgatcccggtggagggggtcaaaccggtctccatcgaaaaggcactggcg
gatgagccgcgcctgcgcgaagaggccaagaacgaagaggtcgtcgcgcggctgcttgaa
tatggccaacaggtcgaagggctgctgcgcaacgcctcgacccatgccgccggtgtggtg
atcggggaccgccccttggatgcgcttgtcccgctttaccaggatccgcgctctgatatg
cccgcaacccagttcaacatgaaatgggtggaacaggccggattggtcaagttcgacttt
cttggcctgaaaaccctgaccgtgatccagaacgcggtggatcagatcaaagcctccggt
cggcatctgcacatcgcggcggatggctccgaattgtttgagccgcccgaggggttgatc
gacgacatcgccaccatcccgctggatgacgaggcgtcctacaaactctacgccagcgcc
aaaaccgtggccgtgttccaggtggaaagctcggggatgatggatgcgctcaagcggatg
aaacccacctgcattgaggacatcgtggcgctggtggcactctaccgtcccggcccgatg
gagaacatcccaacctattgcgaggtcaagaacggcaagcgcgagcgcgaatccgtgcac
ccttccattgatcacatcctggaggaaacccaaggcatcatcgtttatcaggaacaggtg
atgcagattgcgcaagtcatggcgggctattctcttggcggtgcggacctgctgcgccgc
gcgatgggcaaaaagatcgccgaagagatggccaaggaacgccccaagttcgaaaagggc
gcgatggaaaacggcgtggacaagaaaaaagccgccgaggttttcgatcttctggaaaaa
ttcgccaactacggtttcaacaaatcccacgctgccgcctatgcggtggtcagctatcaa
accgcttggctcaaggccaatcacccggtcgagtttatggccggtgtgatgaactgcgat
atccacctcaccgacaaactggcgatcaatttcgaagaggtgcgcaaacggctcgaactg
ccttgggtgccgccctgcgtgaaccgctccgatgcgacgttcaaagtggtggacggggcg
ctggtctatgcgctgggcgcgttgaaaaacgtcggtgtcgaggcgatgaaactgatcacc
gatggccgaactgtcgacggcgtggacaaaccctttgccacgctctttgatctcgcccgc
cgggttgacctcaaacgggtgggcaaacgcccgctggaaatgctcgctcgctccggtgcc
tttgaccagcttgacccaaaccgccgccgcgtgtttcaggcgcttgatccgctggtcaat
tactccgccgcgatccatgaacaaaaagcctccaatcaggtctcgctgttcggggaggcg
ggtgatgacctgccagaaccgcggatgctgccctgcgacgattggctgcccgccgaacgc
ctgaccgaagagttcaaggccgtggggttctacctctccggccacccgcttgatgactac
atgggcccgctgaaacgcaagggcgtgatgacattggacgaggtcaccgccaaggccgaa
ggcggcgcattggtcgccaagatcgcgggcgttgtcgccggacggcaggaacgcaaatcc
gcccgcggcaaccgctttgcctttgcacaattgtccgacaccacgggcggttacgaggtc
acgctgttctccgacacgcttgaggccgcccgcgaacaccttgaaaccggatcaaaagtt
gtggtcacggtcgaggccacgatggaaagtgaccaactcaagctgttgggccggtccgtc
accccgatcgacgccgccgttgccgatgccggcagcatgggcctgcgggttttcatcgac
gaacctgccgccatcgccgccgtggcaggcgtgctcgaaggggcaccccaggcgatacgc
gggcgtgggccggtgcaactgtgcctgatggaccccagcctgcccggcgaggtcgaggtg
gatctgggccgcgagtatccggtcacaccccagattaagggcgcgatccggtccttgggc
ggggttcttgaagtgcaggaaatctag
DBGET
integrated database retrieval system
