Sinorhizobium meliloti GR4: C770_GR4Chr0034
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Entry
C770_GR4Chr0034 CDS
T02405
Name
(GenBank) double-strand break repair helicase AddA, alphaproteobacterial type
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
smeg
Sinorhizobium meliloti GR4
Brite
KEGG Orthology (KO) [BR:
smeg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smeg03400
]
C770_GR4Chr0034
Enzymes [BR:
smeg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C770_GR4Chr0034
DNA repair and recombination proteins [BR:
smeg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
C770_GR4Chr0034
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
NPHP3_N
DEAD
Motif
Other DBs
NCBI-ProteinID:
AGA05027
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All DBs
Position
complement(33242..36811)
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AA seq
1189 aa
AA seq
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MRSDATGPEERSPEGWLDWTTQRQALASDPACSAWVSANAGSGKTHVLTQRVIRLLLAGC
RPSAILCLTYTKAAASEMSNRVFEKLAEWATLDDTTLEKRIEAIEGKRPPTAKIQEARRL
FARALETPGGLKIQTIHAFCEALLHQFPLEANVAGHFSVLDDRAAAVLLADARRALLTAT
AAASDGELAEAFATVLDLADDTGLEKLLAAIVANRAPIQAFLDHASGRGGMEAHLRAALG
LEPGETAGTVMAAVWPLAGLNGPALDDYIDLGLRLGGAKPSAIADGLRAVRAIDDAATRY
SKLVELFFNGGGKPKAESAFLNAAMRRAAPQLELRVEEARSHMLACVDRLSIVQMYGATR
AALVLAERLNRDYEALKKARSQLDFEDLIHRTAALLARSDVGAWVHYKLDQGIDHILVDE
AQDTSPAQWTIIQSLAADFFAGETARADDRTIFAVGDEKQSIYSFQGARPERFSRESTLT
ERRVRAGNKHFSPIRLQLSFRSTVDVLSAVDTVFANPGNARGLSARSEAIVHASNRIGQP
GAVDLWDVIAPEPAASEEDWTAPFDATPERAPVNILARRIAAVLEDWIGRETVIEKGVRR
AMRPGDVIVLVRKRDAFVNALTRALKRRGNIPVAGADRLVLTSHIAVQDLIALGRFVLLP
EDDLSLAALLKSPLLDLGEEDVFELAARRTEGESLWRRLRQAGAEETSRYHEAVRTLSRY
SGLARELLPHDFYARVLGADGGRRAFLARLGSEVSDILDEFLTFALDHERNGLPGLQAFI
STLEIEAPTVKREQDKERDEVRVMTVHAAKGLEAPVVFLVDGGGEAFVRQQVSDLRFLEK
AQVDHSTLTVPVWRAPGSAPNSLIAADNERLKKLAEEEYRRLLYVGMTRAADRLIVCGYR
GQRQNTDTWHSMVQGTLAQDLKGRGTPRLFRAGSEEWQGIAWREAHVPRDLPTSEGRSEE
SQRPTAGLPTALFTPPAAPRRLPRPLAPSGTTIAIDDPDAEAIVGSALFAGKSAPKFSML
RGAILHRLLQVLPSVDGPERLAAAERYLARSVPRWPEAERRALAGTVMDVLDHADLQPLF
GEHSRAEVSVMGTLKLGVREFAVSGRIDRLAVTGDMVTIADYKTNREIPETPEEIAPVYR
NQLAIYRELLKPLYPGKRFRCVLIFTEGPAIRVLPEPMLDRSLEELATK
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atgaggagtgatgcgacaggcccggaggagagaagccccgaggggtggctcgactggacg
acgcaacggcaggcgctcgcctccgatcccgcgtgttccgcctgggtttccgccaatgcc
ggctccggcaagacgcatgtgctcacgcagcgcgtcatccggcttctgcttgcgggttgc
cggccgtccgccatcctctgcctgacctacacgaaggcggccgcctccgagatgtcgaac
cgcgtgttcgagaaactcgccgaatgggcgaccctcgacgataccacgctggaaaagcgc
atcgaggcgatcgaaggcaagcggccgcccacggccaagatccaggaggcccgccggctg
ttcgcgcgcgccctggaaaccccgggcgggctgaaaatccagacgattcatgccttctgc
gaggcgcttctgcaccagttcccgctcgaggccaatgtcgcagggcatttctccgttctc
gacgaccgcgcagcggcggtgctgctcgccgatgcccgcagggctctcttgaccgccacg
gcagcagcgagcgacggggaactggcggaggccttcgccacggtcctcgatcttgccgac
gataccgggcttgaaaaactgcttgcggcgatcgtcgccaaccgggcgccgatccaggcc
tttctcgaccacgcctccggacgcggcggtatggaagcgcatctgcgggcagcgctcggc
ctcgaacccggcgagaccgccgggacggtcatggccgcggtctggccgctggcggggcta
aatggcccggcactcgatgactatatcgaccttggattgcgcctcggcggcgcgaagccc
tctgccatcgcagacggcttgcgggccgtccgcgcgatcgatgacgccgccacccgctat
tccaaactcgtggaactcttcttcaacggcggcggcaagccgaaggcggaatcggccttt
ctgaacgccgccatgcgccgtgcagcgccgcagctcgaactcagggtcgaagaggcgcgc
agccatatgctcgcctgcgtggaccgcctgagcatcgtccagatgtacggggcgacccgc
gccgccctcgttctcgccgagaggctcaaccgcgactacgaagcgctcaagaaggcacgc
agccagctcgatttcgaggatctcatccaccgcacggcggcactgcttgcccgaagcgac
gtcggtgcctgggtgcactacaagctggatcaggggatcgaccatatcctcgtcgacgag
gcgcaggatacgagtcccgctcagtggacgatcatccagtcgctcgcggcggatttcttt
gccggcgaaacggcgcgtgcggacgaccgcacgatcttcgccgtcggcgacgagaagcag
tcgatctattccttccagggagcccggccggagcgcttttcgcgtgagagcacgttgacg
gagcggcgggtgcgcgcgggcaacaagcacttcagccccatccgcctgcagctttccttc
cgctcgacggtggacgtgctctccgccgtcgatacggtctttgcaaatcccgggaatgcg
agaggcctgagcgcccggagcgaggcgatcgtgcatgcctcgaacaggatcggccagccg
ggcgccgtcgacctctgggatgtgatcgcgcccgagccggcggcttcggaagaggattgg
accgctcctttcgacgcgacgcccgagcgcgcgccggtcaacatcctcgcccggcgcatt
gcagcggtcctcgaagattggatcggccgggagacggtgatcgaaaaaggcgtgcgccga
gcgatgcggcccggcgacgtcatcgtgctggtccgcaaacgcgacgccttcgtcaacgcc
ctgacgcgcgccctcaagcggcggggcaatattcccgtcgccggcgcggaccgactggtt
ctgaccagccatatcgccgtgcaggacctgatcgcgctcggccggttcgtgcttctgccc
gaggacgacctgtcgctcgcggcactgctgaagagcccgctcctcgatcttggcgaggag
gacgtcttcgaactcgccgcccggcggaccgagggcgaaagcctctggcggcggctgcgg
caggcgggcgcggaggagacgagccgttatcatgaagcggtccgcacgctttcgcgctat
tccggcctggcgcgggaactgctgccgcacgatttctatgcccgtgtcctgggcgccgat
ggcggacggcgtgccttcctggcgcgcctcggcagcgaagtcagtgatattctcgacgaa
ttcctcaccttcgctctcgatcatgaaaggaacggtctgccgggcctgcaggctttcatc
tcgacgctggagatcgaagcgccgacggtcaagcgcgagcaggacaaggaacgcgacgag
gtccgcgtgatgaccgtacatgccgcaaagggcctcgaggcgccggtcgtcttcctggtc
gacggcggcggcgaggccttcgttcgccagcaggtctcggacctgcgcttcctggagaaa
gcgcaggtcgatcattccacgctcacggtcccggtctggcgcgcgccgggctcggcgccg
aactcgctcatcgccgccgacaacgagcggctgaagaagctcgccgaggaggaataccgc
cggctcctctatgtcggcatgacgcgcgcagccgaccgcctgatcgtctgcggctatcgc
gggcagcgccagaacaccgacacctggcattcgatggtgcaggggacgctggcacaggac
ctcaagggccgcggaacgccgaggcttttccgcgccggaagcgaggagtggcaggggata
gcctggcgcgaagcgcatgtgccgcgcgaccttccgacatccgaaggccgctccgaagaa
tcgcaacggccgacagccggcctgccgacggcgcttttcacgcctccggccgcgccgcgg
cggctgccccggcctcttgccccgtccggcacgaccatcgcaatcgacgatcccgacgcc
gaagcgatcgtcggctcggccctcttcgccggcaagagcgcgccgaaattctcgatgctg
cgcggcgcgatcctgcaccggttgctgcaggttcttccgtcggtcgacggccccgagcgt
ctggccgcggcggagcgctatctcgcccgttccgtgccacgctggcccgaagccgaacgg
cgcgcactcgccgggaccgtgatggacgtgctcgaccatgcggatctgcaaccgcttttc
ggcgagcacagccgggcggaggtctccgtgatggggacgctgaagcttggggtccgcgaa
ttcgccgtatcgggccggatcgaccgtctggccgtcaccggcgacatggtgacgatcgcc
gattacaagaccaaccgcgaaatccctgagacgcccgaagagatagcgccggtctacaga
aatcagcttgcgatctatcgcgaactcctgaaacctctttaccccggcaagcgtttccga
tgcgtgctgatcttcacggaagggcccgcgatccgggtgcttcccgagccgatgctggac
aggagtcttgaagagctcgcgacaaagtga
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