Sinorhizobium meliloti GR4: C770_GR4Chr0178
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Entry
C770_GR4Chr0178 CDS
T02405
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
smeg
Sinorhizobium meliloti GR4
Pathway
smeg03030
DNA replication
smeg03410
Base excision repair
smeg03420
Nucleotide excision repair
smeg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
smeg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
C770_GR4Chr0178
03410 Base excision repair
C770_GR4Chr0178
03420 Nucleotide excision repair
C770_GR4Chr0178
03440 Homologous recombination
C770_GR4Chr0178
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smeg03032
]
C770_GR4Chr0178
03400 DNA repair and recombination proteins [BR:
smeg03400
]
C770_GR4Chr0178
Enzymes [BR:
smeg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
C770_GR4Chr0178
DNA replication proteins [BR:
smeg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
C770_GR4Chr0178
DNA repair and recombination proteins [BR:
smeg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
C770_GR4Chr0178
NER (nucleotide excision repair)
GGR (global genome repair) factors
C770_GR4Chr0178
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
DNA_polI_exo1
HHH_5
HHH_2
IMS_HHH
HHH
Taq-exonuc
Transposase_20
NYN_YacP
Motif
Other DBs
NCBI-ProteinID:
AGA05163
LinkDB
All DBs
Position
complement(193206..196220)
Genome browser
AA seq
1004 aa
AA seq
DB search
MKNGDHLFLVDGSGFIFRAFHAIPPLNRKSDGLPVNAVAGFCNMLWKLLTDARDTSVGVT
PTHLAVIFDYSSKTFRNGLYDQYKANRTAPPEDLIPQFGLIRHATRAFNLPCIEKEGYEA
DDLIATYARLAEEAGADVTIVSSDKDLMQLVTPKVSMYDSMKDKQITVPDVIEKWGVPPE
KMIDLQAMTGDSTDNVPGIPGIGPKTAAQLLEEYGDLDTLLARAGEIKQQKRRESIIANA
DLARLSRELVTLKKDTPLDVPPEDFRLDSQDGPKLIAFLKAMEFTTLTRRVAAATDTDAE
AIEPAHVPVEWGAQAHGPDLDVGEAGGPPPSPQSSSATPPRGNAARAAVSFLSSGQDADT
TGATPTGLAEARAAYFGKAPFDHSGYRTIRDIDTLERWIADAREAGLVGFDTQATSPDAM
RADLVGFSLAVADYANDPSGSRIRAAYVPLAHKSGVSDLLGGGPVDSQVPVRETLSRLKE
LLEDPSVLKVGQNLKYGYLVMKRHGIAMRSFDDTMLMSYVLDAGNGAHGMDSLAERWLGH
TPIAYKDVTGTGRSSLTFDFVDIDKATAYAAEDADIALRLWHVLKPRLAAKGLTRVYERL
ERPLISVLAGMEERGITVDRQILSRLSGELAQGAAALEDEIYRLAGETFTIGSPKQLGDI
LFGKMGLPGGSKTKTGQWSTSAQVLEDLAAAGHDLPRKIVDWRQLTKLKSTYTDALPGFV
HPETKRVHTCFAMAATTTGRLSSSDPNLQNIPIRTGEGRKIRTAFVATPGHKLVSADYSQ
IELRVLAHVADIPQLRQAFADGVDIHAMTASEMFGVPVDGMPSEIRRRAKAINFGIIYGI
SAFGLANQLSIERSEAGDYIKRYFERFPGIRDYMENTKAFARENGYVETIFGRRAHYPDI
RSSNPSMRAFNERASINAPIQGSAADIIRRAMVKMEPALEAAKLSARMLLQVHDELIFEV
EDGEIERTIPVIISVMENAAMPALDMRVPLKVDARAAHNWDEAH
NT seq
3015 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaacggtgatcatctcttcctcgtcgacggctcgggcttcatcttccgggcgttc
cacgccatcccgccgctcaaccgcaagtcggacggacttcccgtcaatgcggtcgcggga
ttctgcaacatgctctggaagcttttgaccgacgcgcgcgacacctccgtgggcgtgacg
ccgacacatctggccgtgatcttcgactattcctcgaagaccttccgcaacgggctctac
gatcagtacaaggccaaccggacagcgccgccggaggatctgatcccgcagttcgggctc
atccgccacgccacccgcgccttcaacctgccctgcatcgagaaggaaggctacgaggcc
gacgacctcatcgcgacctatgcacggcttgccgaggaggcgggcgccgacgtgaccatc
gtttcctccgacaaggacctcatgcagctcgtcacgccgaaggtgtcgatgtacgacagc
atgaaggacaagcagatcaccgttccggacgtgatcgaaaagtggggcgtgccgccggaa
aagatgatcgatctccaggccatgaccggcgattcgaccgacaacgtgccgggcatcccc
gggatagggccgaagacggcagcccagctcctcgaagagtatggcgatctggacacgctg
cttgcgcgggccggcgagatcaaacagcagaagcggcgcgagtccatcatcgccaatgcc
gatctggcgcgcctttcgcgtgagctcgtgacgctgaagaaagacacgccgctcgacgtt
ccgcccgaggacttcaggctcgattcgcaggacggcccgaagctcatcgcattcctgaag
gcgatggaattcaccacgctcacgcgccgcgtcgcagcggcgacggatacggatgcagaa
gcgatcgaaccggctcatgtgccggtcgaatggggcgcgcaagcgcatgggccggatcta
gacgtcggagaggccggcggcccgccgccgtcgccgcaatcatcgagcgcgacgccgcct
aggggaaatgcggccagggcggctgtctcgttcctctcctccggccaggatgccgatacg
accggcgcgacgcccaccggcctcgccgaggcgcgtgcggcctatttcggcaaagccccg
ttcgaccattccggatatcgcaccatccgcgatatcgatacgctcgagcgttggatcgca
gacgcccgcgaggcggggctcgtcggcttcgatacccaggcgacgtcgcccgacgccatg
cgcgccgacctcgtcggcttttcgctcgcggtcgccgattacgcgaacgacccgtcgggc
tcgaggatcagggcggcctacgtgccgctcgcccataagagcggcgtcagcgacctcctg
gggggtggacctgtcgacagccaggttccggtccgggagaccttaagccggctaaaggag
ctgttggaggacccgtccgtcctgaaggtggggcagaacctgaaatacggctacctcgtg
atgaagcggcatggcatcgccatgcgaagcttcgacgacacgatgctgatgtcctatgtg
ctcgatgccggcaacggcgcccacggcatggattcgcttgccgagcggtggcttggccac
acgccgatcgcctataaggacgtcaccggcaccggccggtcttcgctcaccttcgacttc
gtcgacatcgacaaggcgacggcctatgcggcggaggatgcggatatcgcgctgaggctt
tggcatgtgctgaagccccggctcgccgccaaggggttgacgcgcgtctacgagcggctg
gagcggccgctgatctccgtccttgccgggatggaggaacgcggcataaccgtcgaccgg
cagattctgtcacgcctctccggcgagctggcgcagggggcggcggcgctcgaagacgag
atctatcgcctcgccggcgagacattcaccatcggctcgccgaagcagctcggcgacatt
ctcttcggcaagatgggtcttccgggcggctccaagaccaagaccgggcaatggtcgacc
tccgcgcaggtgctcgaggacctcgcggccgccggacacgacttgccccgcaagatcgtc
gactggcggcagctgaccaagttgaaatcgacctataccgacgccctgcccggcttcgtg
cacccggagacgaagcgcgtccacacctgctttgcaatggctgcgacgacgacggggcgg
ctttcctcctccgatccgaacctgcagaacattccgatcaggaccggcgaaggccgcaag
atccgcacggccttcgtggcgacgccgggacacaagcttgtctcggcggactatagccag
atcgagctgagagtgctcgcccatgtggccgacatcccgcagctgcgccaggctttcgcc
gatggcgtcgacatccatgcgatgacagcttccgaaatgttcggcgtgccggtggacggc
atgccgagcgaaattcgccgccgcgccaaggcgatcaatttcggcatcatctacggcatc
tccgcctttgggctcgccaaccagctttcgatcgagcgttcggaggcgggggattacatc
aaacgctatttcgagcgcttccccggcatccgggactatatggagaacaccaaggccttt
gcccgcgagaacggctatgtcgagacgattttcggccgccgggcccactacccggacatc
cgctcgtccaatccgtcgatgcgcgccttcaacgagcgcgcttcgatcaacgcccccatc
cagggctcggccgccgacatcatccgccgtgccatggtcaagatggaaccggcactcgaa
gcggcgaagctctccgcgcgaatgctgcttcaggtccatgacgagctgatcttcgaggtg
gaggatggcgagatcgagcggaccattccggtgatcatctcggtgatggagaacgccgcg
atgcccgcgctcgacatgagggtgccgctcaaggtcgatgcgcgcgcggcacacaactgg
gacgaggcgcattaa
DBGET
integrated database retrieval system
