Sinorhizobium meliloti GR4: C770_GR4Chr1315
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Entry
C770_GR4Chr1315 CDS
T02405
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
smeg
Sinorhizobium meliloti GR4
Pathway
smeg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smeg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C770_GR4Chr1315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smeg03019
]
C770_GR4Chr1315
03016 Transfer RNA biogenesis [BR:
smeg03016
]
C770_GR4Chr1315
Enzymes [BR:
smeg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
C770_GR4Chr1315
Messenger RNA biogenesis [BR:
smeg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C770_GR4Chr1315
Transfer RNA biogenesis [BR:
smeg03016
]
Prokaryotic type
tRNA degradation factors
C770_GR4Chr1315
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
S1
CSD2
WHD_RNase_R
RNase_II_C_S1
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
AGA06272
LinkDB
All DBs
Position
complement(1386251..1388620)
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AA seq
789 aa
AA seq
DB search
MTRIPRDPTETPAKGAGKKNGRAARTAPAGEKETIVHGVVPSREVLMRFIAENPQHASKR
EIAKAFGLKGEARVELKGLLRSLEEDGLVEKKRKSLVRPGGLPPVTVLDITIRDVDGDLI
GRPAEWLDDDGVAPAVLIKQSSVARAKGKTPVGGLGDRVLAKIFPAKERGGPAYTARIIK
VLDKRKDAVLGVFRATPGGGGRLMPIDKRGEELLIDPEFIGDAKEGDLVEAHLSRIGRYG
LPRAQVQNVIGSVASEKAISMIAIHAHGIPHVFPERVLQEAEAARPATMAHREDWRTLPL
ITIDPADAKDHDDAVYAEPDSSPDNPGGVIVTVAIADVSWYVRARSALDLEALKRGNSVY
FPDRIVPMLPERISNDLCSLKEGVDRPALAVRMRFSKEGRKAGHTFHRIMMRSAAKLSYQ
QAQTAIDGAPDDKTGPILDTILKPLWEAYRTLTRGRERRQPLELDVPERKIILKPDGTVD
RVFVPERLDAHKLIEEMMIQANVAAAETLEQKRQVLIYRVHDQPSLAKQESLREFLATLD
IALAKGGNMRANHFNGILAKADGKPYETIVNQMVLRSQSQAIYSPENIGHFGLNLLRYAH
FTSPIRRYADLIVHRALVSALGLGEGGIMPEEEAALDDIAAEISTFERRAMAAERDTIDR
LIAHHLNGRVGEEFDGRVSGVTKAGLFVTLPAYGADGFIPISTLGRDYFIYDEAHQALSG
EKSGLGYRLGDPVQVKLVEAVPLAGALRFEMLSEGRKMPTAMRSFHKAGRRDRTGARKRP
GTRPPRGRH
NT seq
2370 nt
NT seq
+upstream
nt +downstream
nt
ttgaccaggattccgcgcgacccgaccgaaacgcccgcaaagggcgcaggcaagaagaac
ggccgcgcggccaggacggcaccggccggagaaaaggagacgatcgttcatggcgtcgtt
ccttcccgcgaggtgctgatgcgcttcatcgccgagaacccgcaacacgcctcgaagcgc
gagatcgccaaggcgttcggcctgaagggcgaggcacgggtagagctcaagggactgctg
cgatcgctcgaggaggacgggctcgtcgagaagaagcgcaagtcgctcgttcgccccggc
gggctcccgcccgtcaccgttcttgacattaccattcgcgacgtcgatggcgacctgatc
ggccggccggccgagtggctcgacgacgacggcgtcgcgcccgcagtcctgatcaagcaa
tcaagcgtcgccagggccaagggcaagacgccggtaggcggtctcggcgaccgggtgctc
gcgaagattttcccggccaaggaacgcggcggccctgcctataccgcgcgtatcatcaag
gtgctcgacaagcgcaaggacgcggtcctcggcgtcttccgcgccacgcccggcggcggc
ggccggctgatgccgatcgacaagcgcggcgaggagctcctcatcgatccggagttcatc
ggcgacgccaaggaaggcgatctcgtcgaagcgcatctttcgcggatcggccgctacggc
ctgccgcgggcgcaggtgcagaacgtcatcggctcggtcgcgtccgaaaaggcgatctcg
atgatcgccatccatgcccatggtatcccgcacgtctttccggagagggtgctgcaggag
gcggaagccgcgcgtcctgcaaccatggcgcatcgcgaggactggcgcaccctgccgctc
atcaccatagacccggcggacgccaaggatcacgacgacgccgtctacgcggagccggat
tcgtcgccggacaatccgggcggcgtcatcgtcaccgtcgcgatcgccgacgtctcctgg
tacgtcagggcacgctcggcactcgatctcgaggcgttgaaacgcggcaattccgtttat
tttcccgaccggatcgtaccgatgctgcccgagcgcatatccaacgacctctgctccctg
aaggaaggcgtcgaccgcccggcgcttgcggtccggatgcgcttttccaaggaaggccgc
aaggccgggcatacgtttcaccgcatcatgatgcgaagcgccgccaagctctcgtaccaa
caggcacagaccgcgatcgacggtgctcccgacgacaagaccggccccatactggatacg
atcctcaagccgctctgggaagcctatcgtaccctcacccgcggaagggagcgccgtcag
ccgctcgaactcgacgtgccggagcgcaagatcatcctgaagccggacggcacggtcgat
cgggtcttcgtgccggaacgcctcgatgcgcacaagctcatcgaagagatgatgatccag
gcgaatgtcgccgctgccgagacgctggaacagaaacgtcaggttctgatctatcgtgtc
cacgaccaaccctcgctcgccaagcaggagagccttcgcgaattcctggcgacgctcgac
atcgcgctcgccaaaggcggcaacatgcgggcgaaccatttcaacggcattctcgccaag
gccgacggaaagccttacgagacgatcgtgaaccagatggtgcttcgttcgcaaagccag
gcgatctacagcccggaaaatatcggtcatttcggcctgaacctgttgcgctacgcccac
ttcacctcgccgatccggcgctatgcggatctgatcgtgcaccgcgcgctcgtttccgcg
ctcgggctcggcgaaggcggcataatgcccgaggaagaagcagcgctcgacgatatcgcc
gccgaaatctcgaccttcgagcggcgcgccatggcggctgaacgcgatacgatcgatcgg
ctgatcgcccaccatctgaacggccgcgtcggcgaagagttcgacggacgggtttccggc
gtcaccaaggcgggactttttgtcaccctccccgcctatggcgccgacggcttcatccct
atatctacgctcgggcgcgactatttcatctatgatgaggcgcatcaggccctttccggc
gagaaatccggactgggttaccgtctcggggacccggtgcaggtcaagcttgtagaagcg
gtgccgttggccggtgcactccgtttcgaaatgctgagcgagggacgaaagatgccgacg
gcaatgcgctccttccacaaggccggccgccgcgaccggacgggtgcgcgcaaacgcccg
ggaacgcgaccgccccgcggcaggcactga
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