Sinorhizobium meliloti GR4: C770_GR4Chr1772
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Entry
C770_GR4Chr1772 CDS
T02405
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
smeg
Sinorhizobium meliloti GR4
Pathway
smeg03410
Base excision repair
smeg03430
Mismatch repair
smeg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
smeg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
C770_GR4Chr1772
03430 Mismatch repair
C770_GR4Chr1772
03440 Homologous recombination
C770_GR4Chr1772
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smeg03400
]
C770_GR4Chr1772
DNA repair and recombination proteins [BR:
smeg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
C770_GR4Chr1772
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
C770_GR4Chr1772
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
C770_GR4Chr1772
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Toprim
Motif
Other DBs
NCBI-ProteinID:
AGA06705
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All DBs
Position
complement(1837689..1839491)
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AA seq
600 aa
AA seq
DB search
MDVLADPIQRAFLGVERSVSGQRWVSRLDQAGQNRALAISQVHGYSELIARVLAGRGVGL
DDAAAFLEPTLRALMPDPDTLTDGRKAAERLADAIRRREKVVIFGDYDVDGAASSALMAR
FLRHFDITAEIYIPDRIFEGYGPNPQAIDQLIDRGSELIVTVDCGSTSHEALAVAAERRT
DVVVIDHHQVGSVLPPCHALVNPNREDDLSGQGHLCAAGVVYLVLVNTLRVLRLRGDPRA
ASFDLLSLLDLVALATVCDVVPLKGLNRAYVVKGLLAARHMGNAGLAALLRKAAIGGPVT
PYHLGFLLGPRINAGGRIGDAALGSRLLTLDVAAAAEAIASQLDELNRDRQAMEAAMLAE
AEAEVLAEYGTGEGASVIVTARQNWHPGIVGLIAARIKEKFRRPAFAIAFDPNGRGTGSG
RSINGFDMGRLVRAAVDNGLLVKGGGHAMAAGLTVERGKLGQLRQFFEERAETAIRDLVA
VQTLKVDGALAAAGATLDLVDLLDQAGPYGSGHPQPLFAFPQHRLRDSRQVGANHVKVTL
EGQDGSRMEGIAFRAAETPLGDFLLGNRGATVHVAGSVSADLWQGTRKVQLRVTDAAKAN
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atggacgttttggcggatccgatccagcgggcatttctcggcgttgaacgctcggtcagc
ggtcagcgctgggtgtcgcgcctcgatcaggcgggccagaaccgtgcgctggccatcagt
caggtccacggctattccgaactcatcgcccgcgtgcttgccggacgcggcgtcggactg
gacgacgcggcggcattcctcgagcccacgttgcgcgcactgatgcccgatcccgacacc
ctgaccgacggccgcaaggcggccgagcgactcgcggatgctattcgtcgccgcgagaag
gtggtgatcttcggggactacgatgtcgatggtgcggcctcatccgcgctcatggcgcgt
ttcctgcggcatttcgatatcacggccgagatctatattcccgaccgcatcttcgagggc
tacggaccgaacccgcaggcgatcgatcaattgatcgatcggggctccgaactgatcgtc
acggtcgactgcggctcgacgagccatgaagcgctggcggtggcggctgagcgcaggacc
gatgtcgtggtcatcgaccaccatcaggtcggctcagtgctgccgccgtgtcacgccctg
gtgaatccgaaccgggaggacgatctgtcggggcaggggcatctctgcgccgcgggcgtc
gtctatctggtactcgtcaatacattgcgcgtgctccgcctcaggggcgacccgcgcgcg
gcatccttcgaccttctgtcgttgctcgatctggtggcgcttgcgaccgtctgcgacgtg
gtgccgctcaagggtctcaaccgggcctatgtcgtcaagggactgcttgccgcacggcac
atgggcaatgcgggccttgccgcactcttgcgcaaggcggcgatcggcggacccgtgacc
ccctatcatctcggcttcctgcttggcccgcggatcaatgccggcgggcgtatcggcgac
gctgcgctcggcagccgtctgctgaccctcgacgttgccgcggcggcggaagccatcgcc
agccagctcgatgaactcaatcgcgatcgccaggcgatggaggcggcgatgcttgcggag
gcggaagccgaggtgctggcggaatacggaacgggcgagggcgcgtcggtgatcgtcaca
gccaggcagaactggcaccccggcatcgtcggtctcattgcggcgcgcattaaggagaaa
ttccgccggccggcctttgcaattgcgttcgatccgaacggccgtggaaccggatccggc
cgttcgatcaacggtttcgacatggggcggctcgtccgtgcggccgtcgacaacggcctg
ctggtcaaaggcggtgggcacgcaatggctgccgggctgacggtcgagcgcggtaagctc
ggccagcttcggcaattcttcgaagagcgcgccgaaactgccattcgcgatctcgtcgcc
gtccaaacgctgaaggtcgatggcgcgctggccgccgccggggcgacgctcgacctcgtc
gatcttctcgaccaggcgggcccatatggctccggccatccgcaaccgctctttgccttc
ccgcagcatcggctgcgggatagccgccaagtcggggccaaccacgtgaaggtgacgctc
gaggggcaggacggcagccgcatggaaggcatcgccttccgcgcggcggagacgccgctc
ggcgatttcctgctcggcaaccgcggcgccaccgttcatgttgcgggttccgtgtcagcg
gatctgtggcaggggacacgcaaggttcaactgcgtgtgacggacgcggcgaaggctaac
tga
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