Sinorhizobium meliloti GR4: C770_GR4Chr2423
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Entry
C770_GR4Chr2423 CDS
T02405
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
smeg
Sinorhizobium meliloti GR4
Pathway
smeg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smeg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C770_GR4Chr2423
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smeg03019
]
C770_GR4Chr2423
03400 DNA repair and recombination proteins [BR:
smeg03400
]
C770_GR4Chr2423
Enzymes [BR:
smeg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C770_GR4Chr2423
Messenger RNA biogenesis [BR:
smeg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C770_GR4Chr2423
DNA repair and recombination proteins [BR:
smeg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
C770_GR4Chr2423
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
HHH
HAD_PNKP
AAA_30
ResIII
Motif
Other DBs
NCBI-ProteinID:
AGA07342
LinkDB
All DBs
Position
complement(2547008..2548918)
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AA seq
636 aa
AA seq
DB search
MPSISLDSILRAPDESDSMPESHNTGRLFETEGVSNPLDLLKRIYGYSTFRGQQQAVVDH
VVAGGDAVVLFPTGAGKSLCFQIPALCRRGVGIVVSPLIALMRDQVEALKQLGIRAAALN
SSLTRDEAIAVRRALSRDELDLLYVTPERAVTDGFAEMIADADIALFAIDEAHCVSQWGH
DFRPEYRGLGCLAERFPGVPRIALTATADPHTRDDMIERLGLGGARVFASSFDRPNIAYE
IVERDQPRQQLLRFLSRFKDASGIVYCLSRAKVEDTAEWLDAQGIRALPYHAGMERAARD
AHQDAFLKEENLCLVATVAFGMGIDKPDVRYVAHLDLPGSVEAYYQETGRAGRDGLPSEV
WMAYGMADVIQRRRMIDEGGAPEEIKRIERAKLNSLLAICETAGCRRQAILAHFGEAHPG
GCGHCDTCLKPVETWDGTEAAIKALAAVYRTGERFGTGHLIDVLTGSVNEKTERFGHVDM
PVFGAGKDLPARTWQSIFRQLLAAGLISVDHAAFGALKLEPEARSVFRRERQVLFRKDRP
SSGKAKTARGSKPASERSDLAGSDLELFERLRSERLSLAREMDVPPYVVFPDTTLIALAK
RRPRDFEELLDVPGIGESKRERYGEAFLAVIEAFEG
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
ttgccttcgatcagcctcgactccatactgcgtgctcccgatgaaagcgattccatgccc
gaaagccacaacaccggccgcctgttcgaaacggaaggcgtcagcaatcccctcgatctc
ctgaagcgtatctacggttattccaccttccgcggccagcagcaggcggtcgtcgaccat
gtggttgccggtggcgatgccgtcgtgctctttccgacgggggcgggaaaatcgctctgc
ttccagatcccggcgctctgccgccggggcgtcggcatcgtcgtttcgccgctgatcgcc
ctgatgcgcgatcaggtggaagcgctgaagcagctcggcatccgggccgcggcactcaac
tcttcattgacgcgggacgaggcgattgcggtccgccgcgcactttcgagagacgaactc
gatctcctctacgtgacgccggagcgcgccgtcaccgatggcttcgccgaaatgatcgcc
gatgccgatatcgcccttttcgcgatcgacgaggcccattgcgtatcgcaatggggacat
gacttccgcccggaatatcgcggcctcggctgcctcgccgagcgctttcccggtgtgccg
cggatcgcgcttaccgccaccgcggatccccacacgcgcgacgatatgatcgagcggctg
ggactcggcggggcgcgcgttttcgcctccagcttcgaccgcccgaatatcgcctatgag
atcgtggaacgcgatcagcctcgccagcaattgctgcgcttcctgtcgcgcttcaaggat
gcaagcggcatcgtctattgcctgtcgcgcgcgaaggtcgaggacacggcggaatggctc
gatgcacagggcatccgtgcgcttccctatcatgccggcatggagcgggcggcgcgcgac
gcgcatcaggatgcattcctcaaggaggaaaacctgtgcctcgtcgcaaccgtcgctttc
ggcatgggaatcgacaagccggatgtgcgctacgtcgcccatctcgatctcccgggctcg
gtcgaggcctactaccaggagacggggagggcgggtcgcgatggtctgccttctgaagtg
tggatggcctatggcatggcggatgtcatccagcgccggcggatgatcgacgagggcgga
gcgcccgaggaaatcaaacgcatcgagcgggcgaaactcaattcgctgcttgccatttgc
gagacggcaggctgccggcgccaggccatcctcgcgcatttcggggaggctcatccgggc
ggctgcggtcattgcgacacctgcctgaagccggtcgagacctgggacggcacggaagcg
gcgatcaaggcccttgccgccgtctaccgcaccggagagcgcttcggaaccggccatctg
atcgatgtgcttaccggcagcgtcaacgagaagacggagcgcttcggccatgtcgacatg
ccggtcttcggggccggcaaggacctgccggcgcgcacctggcagtcgatcttccggcaa
ttgctcgccgcagggctgatctccgtggaccacgccgccttcggagcgttgaagctcgag
cctgaggcccgcagcgtctttcgccgcgaacggcaggtgctcttccgcaaggaccgtccg
agttccggcaaggccaaaaccgcacgcgggtcgaagccggccagcgaacgatcggacctc
gcgggatccgatctcgaactgttcgagcggctccggtccgagcgcctgtctctcgcccgc
gagatggacgtgccgccttatgtcgtctttccggatacgaccctgattgcgcttgccaaa
cggcgtccgcgcgatttcgaggagctgctcgacgttcccggcatcggcgagagcaagcgg
gagagatatggcgaagcgtttctcgctgtgatcgaggcgttcgagggctaa
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