Spiroplasma melliferum: SRED_003007
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Entry
SRED_003007 CDS
T07411
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
smei
Spiroplasma melliferum
Pathway
smei03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
smei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SRED_003007
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smei03400
]
SRED_003007
Enzymes [BR:
smei01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
SRED_003007
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
SRED_003007
DNA repair and recombination proteins [BR:
smei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
SRED_003007
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
NFACT_N
MCR
zf-FPG_IleRS
Zn_ribbon_6
Znf_XAF1_N
PSCyt3
Ribosomal_S13
Zn_ribbon_IS1595
Zn_Ribbon_Prim
Motif
Other DBs
NCBI-ProteinID:
QCO24510
LinkDB
All DBs
Position
complement(1298738..1299571)
Genome browser
AA seq
277 aa
AA seq
DB search
MPELPEVETVRCILTKHVVGKTITDCQIFWNKIIKYPLDSKEFIKEIVKQKINRIDRMGK
HLLFILDDYVLISHLRMEGKYYFTSKDEPGEWQHIMVLFELDHQFQLRYHDTRKFGTMHL
YSKNDYLQQAPLNKLGYEPFDEKITVSYLKNAWQNKSQPIKTTLLEQNVIVGIGNIYANE
ILFASKIHPGERTKNLVDQDYQNIIENTKLVLQKAIDEGGTTIATYHPEPGMDGKFLQQL
KVHGRNKMECLNCHQLIDKIFINGRGTYFCNYCQKLK
NT seq
834 nt
NT seq
+upstream
nt +downstream
nt
atgccagaattaccagaagttgaaacggttcgttgtattttaacaaaacatgttgttgga
aaaacaattactgattgtcaaattttttgaaataaaataataaaatatcctcttgattca
aaggaatttataaaagagattgttaaacaaaaaattaatcgaattgatcgaatgggaaaa
catttattatttatattggatgattatgttttaattagtcatttacgaatggaaggcaaa
tattattttacatcaaaagatgaacctggcgaatgacaacatattatggttttatttgaa
cttgatcatcaatttcaattgcgatatcatgatacaaggaaatttggaacaatgcattta
tatagtaaaaatgattatttacaacaagcaccattgaataagttaggatatgaaccattt
gatgaaaagattacagtttcatatttgaagaatgcttgacaaaataaatcgcagccaatt
aaaacaacattattggaacaaaatgttattgttggaattgggaatatttatgccaatgaa
attttatttgcctctaaaattcatcctggtgaaagaacaaaaaatttagttgatcaagat
tatcaaaatattattgagaatacaaaactagttttgcaaaaagctattgatgaaggaggg
acaacaattgcaacttaccatcctgaaccagggatggatggtaaatttttacaacaatta
aaagtacatgggcgaaataaaatggaatgccttaattgccatcaattaattgataaaatt
tttattaatggacgtggaacttatttttgtaattattgccaaaaattaaaataa
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