Sinorhizobium meliloti 2011: SM2011_b20880
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Entry
SM2011_b20880 CDS
T02497
Symbol
rhlE2
Name
(GenBank) Putative ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
smel
Sinorhizobium meliloti 2011
Pathway
smel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SM2011_b20880 (rhlE2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smel03019
]
SM2011_b20880 (rhlE2)
Enzymes [BR:
smel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SM2011_b20880 (rhlE2)
Messenger RNA biogenesis [BR:
smel03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SM2011_b20880 (rhlE2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
AAA_22
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AGG72181
LinkDB
All DBs
Position
pSymB:1286269..1287780
Genome browser
AA seq
503 aa
AA seq
DB search
MSTFKELGLSEHIVATLSANGFEKPTPIQAQAIPLVLKDHDLIGLAQTGTGKTAAFGLPM
IEKLVADGRRPDPRNIRALVLAPTRELVNQIAANLKLFVKKSPLKIGLVVGGVSINKQTE
QLARGVDILVATPGRLLDLVSRKAVTLTQARYLVLDEADQMLDLGFIHDLRKISKLVPKN
RQTLLFSATMPKLIAELAGEYLTDPVKVEVSPPGKAADKVEQYVHFVPGKDLKTTILKQT
LTANPDGLSLIFSRTKHGAEKLMKHLDHVGFKAASIHGNKSQGQRERALKAFRDGEIRVL
VATDVAARGIDIPGVTHVYNYDLPEVPDAYVHRIGRTARNGRDGIAIAFCAPDEIRLLRD
IEKLMGIQIAVASGEAPADQARPSKGRGGRGNGQPRGNGQPRGNGAGQRQGGPRRDRPQR
QAAAGGFAGDELLRDERSHERRDQRAAGHGPADGRPEGHRNHKAQKHHGRPGPQQARRGS
EQSGERNGGGNRPQRADGRGHQR
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
ttgtccactttcaaagagcttggcctctccgagcacatcgtggcgacactctccgccaat
ggtttcgaaaagccgacgcccatccaggctcaagccattccgctggtcctgaaagaccat
gacctcatcggtcttgcgcagacgggtaccggcaagaccgctgcgttcggcctgccgatg
atcgaaaagctcgtagccgatggcagacgtcccgatccgcgcaacattcgcgctctcgtg
ctcgcacctacccgtgaactggtgaaccagatcgcggccaacctgaagcttttcgtaaag
aagagcccgctcaagatcggcctcgtcgtcggtggcgtttcgatcaacaagcagaccgaa
cagctcgcccgtggcgtcgacattctcgtcgcgacccccggccgcctgctcgaccttgtt
tctcgcaaggcggtgacgctgacacaggctcgctacctcgttctcgacgaggctgaccag
atgctcgatctcggcttcatccacgacctgcgcaagatttccaagctggtgccgaagaat
cgtcagacgctgctcttctccgcaaccatgccgaagctgattgccgagcttgccggcgaa
tacctgaccgatccggtcaaggtcgaagtctcgcctccgggtaaggccgccgacaaggtc
gaacaatatgtgcatttcgtccccggcaaggacctgaagacgacgatcctgaagcagacg
ctgactgccaatcccgatgggctgtcgctgattttcagccgcaccaagcatggcgccgag
aagctgatgaagcatctcgaccatgtcggcttcaaggccgcctcgatccatggcaacaag
agccagggccagcgggagcgcgcgctgaaggcattccgcgacggtgagatccgcgtgctc
gtggcgacggatgtggccgctcgcgggatcgacattccaggcgtcacccacgtctacaac
tacgacctgccggaagtgcccgacgcctatgtgcaccgtatcggccgcacggcccgtaac
ggccgcgacggcatcgcgatcgcattctgtgcgccggacgaaatccgcctgctgcgtgac
atcgaaaagctgatgggcatccagatcgccgtcgccagcggcgaagcgcccgccgaccag
gcgcgcccctcgaagggacgtggcggtcgcggcaacggtcagcctcgtggtaacggccag
cctcgcggcaatggcgcagggcagcgccagggcggaccccgccgcgatcggccgcagcgc
caggcggcagctggcggattcgccggcgatgaactgctgcgcgacgagcgctcgcacgag
cgccgcgaccagcgtgctgccgggcatggaccggcggacggacggccggaaggccaccgc
aatcacaaggcgcagaagcaccatgggcggcccggaccgcagcaggcccgccgtgggagc
gaacagtcaggcgaacgcaacggcggcggcaatcgaccgcagcgtgccgacggtcgcggc
catcagcgctag
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