Sinorhizobium meliloti 2011: SM2011_c01336
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Entry
SM2011_c01336 CDS
T02497
Symbol
rne
Name
(GenBank) putative ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
smel
Sinorhizobium meliloti 2011
Pathway
smel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SM2011_c01336 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smel03019
]
SM2011_c01336 (rne)
03009 Ribosome biogenesis [BR:
smel03009
]
SM2011_c01336 (rne)
Enzymes [BR:
smel01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
SM2011_c01336 (rne)
Messenger RNA biogenesis [BR:
smel03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SM2011_c01336 (rne)
Ribosome biogenesis [BR:
smel03009
]
Prokaryotic type
rRNA processing factors
SM2011_c01336 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AGG73907
LinkDB
All DBs
Position
complement(1441636..1444410)
Genome browser
AA seq
924 aa
AA seq
DB search
MAEKMLIDASHSEETRVVVVRGNRIEEFDFESEHKKQIRGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFAEIHPDYYQIPLADRQALLKAEAEEARRDDDEPNDTVAEQKFAPAGDTV
AEVVAQAEAAEAAGEAAEAAAEKPKAKAKPKRTRRAKPKAGEEAVAPESGPSEDGEGDKN
EMAAVVDTDSISEDIDARRQRDDDDDDDNHDGEKEIIESVGAEDAMEEVADRHIRKPRKQ
YRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITNLQ
DRKRLKEIARGLDVPQGMGVILRTAGANRTKVEIKRDFEYLMRLWENVRTLTLNSTAPCL
VYEEGSLIKRSIRDLYNKDISEIVVSGEEGYKEAKGFMKMLMPSHAKVVQPYRDVHPIFS
RSGIEAQLDRMLQPQVTLKSGGYIIINQTEALVSIDVNSGRSTREHSIEDTALQTNLEAA
EEVARQLRLRDLAGLIVIDFIDMEEKRNNRSVEKKLKDCLKNDRARIQVGRISHFGLLEM
SRQRIRASVLESTMQTCPHCNGTGHIRSQSSVALHVLRGIEEHLLKNTTHDISVRTTPDI
ALYLLNQKRSSITDYEQRFGVSIFIEADAHVGAQHFAIDRGEPVENPVRIDQILQFEPEP
EDEEEVLIEEESDEEEVEEIAAERQDPKKGQTDEQGGRKRKRRRRRRGKGAGQGADEAFA
DAADAAEDETGDEAAVDDAEDEVDATDALNGDSEQKRKRRRRGKRGGRRSRQDELAEAEG
ETGMAAEAGEGAGDDAEAEVAPAAAAEETSPDIAAAAAVEAAAEEPKPAKPRRSRKKAVK
AEEPAESVDEVAEKTVEAQPEATEAAPEAVEEAVADLEGAKPARANRDLSAIATEPVVTS
SKGEGEEEPTKPKKGGWWQRRGFF
NT seq
2775 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaaaatgcttatcgatgcgtctcactcagaggagacgcgcgtcgttgtcgta
cgcggaaaccgcatagaagaattcgatttcgaatcggaacataagaagcagatccgcggc
aatatctacctggcgaaggtaaccagagtggagccgtcgctccaggcggccttcgtcgat
tacggcggcaatcgccacgggtttctggccttcgccgaaatccatcccgactactaccag
attcccctcgccgatcgtcaggccctgttgaaggcggaagccgaagaggctcgccgcgac
gatgacgagccgaacgacaccgtggcggaacagaaattcgcgccggctggcgatacggtt
gccgaagtcgtggcacaggccgaagccgccgaggcagccggagaagccgctgaggccgct
gcggagaagccgaaggccaaggccaagccgaagcgtacccgccgcgcgaagccgaaggcc
ggcgaagaggccgtggcgcctgaaagcggcccgtcggaagacggcgaaggcgacaagaac
gaaatggccgcggtggtcgataccgactcgatctccgaggatatcgacgcgcgccgtcag
cgtgacgacgacgatgacgacgacaatcacgacggcgaaaaggaaatcatcgaatccgtc
ggcgccgaagatgccatggaagaggtggcggatcgtcatatccgcaagccgcgcaagcaa
taccgcatccaggaagtgatcaagcgccggcagatcctgctggtgcaggtcgcaaaggaa
gagcgcggcaacaagggtgcggcactcacgacctatctttcgctcgccggccgctactcc
gttctcatgccgaacacggcgcgcggcggcggtatttcgcgcaagatcaccaacctgcag
gaccgcaagcgtctgaaggagatcgcccgcggtctcgacgtgccgcaggggatgggtgtg
atcctgcgcaccgccggagccaatcgcacgaaagtcgagatcaagcgcgacttcgaatat
ctcatgcgcctgtgggagaacgtccgcacgctgacgctgaactcgactgccccctgcctc
gtctacgaggagggcagccttatcaagcgatcgatccgcgacctctacaacaaggacatc
agcgagatcgtcgtttcgggcgaggaaggctacaaggaagccaagggcttcatgaagatg
ctgatgccgagccacgcaaaggtcgtgcagccctatcgcgacgtgcatccgatcttctcc
cgctccggcatcgaagcacagctcgatcgcatgctgcagccgcaggtgacgctgaagtcg
ggcggctacatcatcatcaaccagaccgaagctctggtttccatcgatgtgaactccggt
cgttcgacgcgcgagcactcgatcgaggatacggctctccagacgaatctcgaggcagcc
gaggaagtagcgcggcaattgcgccttcgcgaccttgccggcctgatcgtcatcgacttc
atcgacatggaagagaagcggaacaaccgctccgtcgagaagaagctaaaggattgcctg
aagaacgatcgtgcccgtatccaggtcggccgcatctcgcatttcggcctgctcgaaatg
tctcgccagcgcatccgcgcctcggtgctggaaagcacgatgcagacctgcccgcactgc
aacggcacgggccacattcgctcgcaatcctccgttgccctgcatgtcctgcgcggcatc
gaggaacatctgctcaagaacaccacgcacgacatcagcgtgcggacgacacccgatatc
gcgctctacctgctcaatcagaagcgcagttcgatcacggactacgagcagcgcttcggt
gtctccatcttcatcgaagcggacgcccatgtcggtgcgcagcacttcgcgatcgatcgc
ggtgaaccggtcgaaaatccggtgaggatcgaccagatcctgcagttcgagccggagccg
gaagacgaagaagaggtcctcatcgaggaggagtccgacgaagaggaagtggaagagatt
gctgccgagcgtcaggacccgaaaaaggggcagaccgacgaacaaggcggccgcaagcgc
aagcgtcgtcgccgccggcgcggcaagggtgcgggtcagggggcggacgaggccttcgct
gacgccgccgacgcggctgaggacgagaccggcgacgaagccgccgtggacgatgccgag
gatgaagtcgacgctacggatgccttgaatggcgatagcgagcagaagcgcaagcgtcgc
cgccgcggcaagcgtggcggccgccgcagccgtcaggacgaactggccgaagccgagggc
gagaccggcatggctgcagaagccggcgaaggagccggcgacgacgcagaggcggaagtc
gccccagccgcggcagccgaggagacgtcaccggatatcgcggcagccgctgccgtcgag
gcagcagcggaggagccgaaaccggcaaaaccccggcgcagccgcaagaaagcagtcaag
gccgaggagccggccgagagtgtcgatgaagtagccgagaagaccgtcgaggcccaaccc
gaagcaaccgaagccgcccccgaggccgtggaggaagctgttgccgatctggaaggcgca
aagcccgcgcgcgcaaaccgggatctgtcggcgatcgctaccgagccggtcgtgacgtcc
agcaagggcgagggcgaagaggagccgacaaaacccaaaaagggcggctggtggcagcgc
cgcggtttcttctaa
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