Streptococcus merionis: SAMEA4412692_1287
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Entry
SAMEA4412692_1287 CDS
T07119
Symbol
rnjB
Name
(GenBank) metallo-beta-lactamase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
smen
Streptococcus merionis
Pathway
smen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SAMEA4412692_1287 (rnjB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smen03019
]
SAMEA4412692_1287 (rnjB)
Messenger RNA biogenesis [BR:
smen03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SAMEA4412692_1287 (rnjB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
P8
Motif
Other DBs
NCBI-ProteinID:
SNU88944
UniProt:
A0A239SW27
LinkDB
All DBs
Position
1:complement(1400802..1402463)
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AA seq
553 aa
AA seq
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MDNIKIIALGGVRENGKNLYLAEIEDTIFVLDAGLKYPENDQLGVDLVIPNMDYLVENKK
RVAGVFLTHGHADAIGALPYLLANVKVPVFGSELTIELAKLVVKNYDLTKKFNDFHIINA
ETEIDFGVTEVSFFKTTHSIPESLGVVLKTKAGNIVYTGDFKFDQAAEDGYQTDFARLAE
IGREGVLALLSDSANADSKIQIASEREVEAEVAHVMSDCSGRVIVAAVASNLSRIQQVFD
AADETGRYVLLTGYDVENIVRTAMKLGKLKVSNERLIIKPKDLPRFEDHELVILETGRIG
EPLEGLRKMAIGRHRYVQIKDGDTVFIATTPTVSKEAMVARVENLIYRAGGEVKSITNNL
RVSGHGNFRDLQMMINILNPNYLFPTQGEYRQLAAHAEAAQEVGILPEHIYIMKRGDVMV
YEGDAFLHTGSVASGDVLLDGQAIGDVGNVVLRDRKLLSEEGIFIVAMTINRRQKKIVAK
ARVHTRGFVYVKKSRDILSEAADLVNTTVENYLAQDDFDWGDLKGEVRDALGKYLFDQTK
RRPTVLPVLMEVR
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atggacaacataaaaattatagctctgggtggggttcgtgaaaatggtaaaaatctctac
ctagctgaaatagaagacacgatttttgtcttggatgcggggttgaaataccctgagaat
gaccagcttggcgtggacttggtgattcctaatatggactatctggttgaaaataaaaaa
cgagtagcaggggtttttctgacccatggacacgctgatgcgatcggtgctttgccctat
cttttggccaatgttaaagtgcctgtttttggatctgagttaaccatcgaattggcgaaa
ttggtcgtgaaaaattacgatttgaccaagaagtttaacgattttcatatcattaacgcc
gaaaccgaaattgattttggtgtgacagaagtgtctttcttcaagacgactcactctatt
ccagagagtttgggagttgtgcttaagactaaggcaggaaatattgtctacacaggtgat
ttcaagtttgatcaggcggcagaagatggttaccagacagactttgcgcgtttagctgaa
atcggacgtgagggcgttttggctcttctgagtgattcagctaacgctgatagcaagatt
cagattgccagcgaaagagaggtcgaagctgaggtcgctcacgtcatgtcagactgtagc
gggcgtgtcattgtggcagctgttgccagcaatttgtctcggattcagcaggttttcgat
gctgctgatgagacaggacgctatgtccttttgacaggatacgatgtggaaaacattgtg
cgcacagctatgaagcttggaaaactgaaagtttccaacgaacgtttgatcattaagcct
aaagatctgccgcgttttgaagatcatgagctagtcattttagagactggccgcatcgga
gaaccattagaaggccttcgtaagatggcaattggccgtcaccgctatgtccaaattaag
gatggggatacggttttcattgcgacgacaccgactgtttctaaagaggcgatggttgct
cgagtggaaaatctgatttaccgtgctggtggtgaagtcaaatcaatcaccaataacttg
cgcgtgtctggtcacgggaatttccgtgatctccagatgatgattaacattcttaaccca
aactacctctttccaacgcaaggggagtaccgtcaattggccgcccatgctgaggctgcc
caagaagttggtatcttgccagagcatatctatatcatgaaacgtggagatgtcatggtt
tatgagggtgatgcttttcttcacacaggttcagttgcctcaggcgatgtcttgttggat
ggccaagccattggtgatgtgggaaatgtcgtgttgcgtgatcgtaagctcctttctgaa
gaaggaatttttatcgttgctatgacgatcaaccgcaggcaaaagaaaattgtggccaag
gctagggttcatacgcgtggctttgtctatgtcaagaagagcagagatatcttgagtgaa
gcagctgacttggtcaacacgacagttgagaattacttggcgcaagacgactttgattgg
ggagatctcaaaggcgaagtccgagatgctttgggcaaatacctgttcgaccagaccaag
cgtcgtcctacggtactgccagtcttgatggaagtccgttga
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