Silurus meridionalis (southern catfish): 124375258
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Entry
124375258 CDS
T08004
Symbol
smarcc1a
Name
(RefSeq) LOW QUALITY PROTEIN: SWI/SNF complex subunit SMARCC1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
124375258 (smarcc1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smeo03021
]
124375258 (smarcc1a)
03036 Chromosome and associated proteins [BR:
smeo03036
]
124375258 (smarcc1a)
Transcription machinery [BR:
smeo03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
124375258 (smarcc1a)
Chromosome and associated proteins [BR:
smeo03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
124375258 (smarcc1a)
PBAF complex
124375258 (smarcc1a)
GBAF(ncBAF) complex
124375258 (smarcc1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
HEAT_GCN1
BRCT
BRCT_2
DUF919
Motif
Other DBs
NCBI-GeneID:
124375258
NCBI-ProteinID:
XP_046689337
LinkDB
All DBs
Position
21:18586634..18600634
Genome browser
AA seq
1105 aa
AA seq
DB search
MATAGTAATAAGGTGSGGSAAGQAGPGASVGRKKDGGPSAKFWESAETVSQLETVRQWVG
KHYKKYVQADSPSCKSLAGLVIQLLQFQEDAFGRRVSNPALTKLPAKSFLDFKAGGALCH
ILGSAYKFKSEQGWRRFDLQNPSRMDRNVEMFMNIEKTLAQNNCLTRPNVYIASDVDQKQ
ASKLKDIIKRHQGSITDDKSKATHLIYPSPAQTEEEEWLRPVMRKDKQVLVHWGNYPDSY
DTWVSASDMDGEIEDPPSSEKPWRVHAKWVLDTDAFNEWMNEEDYEVDENRKPVIFRQRI
FPKEEESSRTPDRKERKSLAGGKKRRRSPSPPSTPAESRKKGNKKGNTGPHWKRRGHRDD
DEQDEDLTKDMEDPSPVPGMEEVSLPKNVNQKKDSENAPVKGGTMADLDEQEDGSVGSGG
KDDDEQGKXEVNRLMDSGEDNVTEQTHHIIIPSYSAWFDYNSIHEIERRALPEFFNGKNK
SKSPEIYLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGDVCAVMRVHAFLEQWGLINYQVD
ADSRPMPMGPPPTPHFNVLADTPSGLVPLHHRPPQVPSAQQMLNFPEKSKEKPTDLQNFG
LRTDMYSKKNPKSKGGSGTREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHF
LRLPIEDPYLESSEASLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVAAAAAKAALEE
FSRVREEVPAELVEAHVKKVQEAARSTGKVDPSYGLDSSGIAGTAPDEPEKTETTETEKM
ETDSETQQGEKTESKEETEKVSEAAEKPAEGEKVKSEMAEKPEGEEDEGDGVELKEVGAA
DEKEKEEAMEVTEGVKEGEETTTEDSKKKLELDIGEGNVATAAAAALASAATKAKHLAAV
EERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALELQRQQLLTERQAFHMEQL
KYAEMKARQQMEQQAAAAAAAQHGQLAPPSQHGAPPPSHIPPPGMHPGPGYPPMHHPMGP
HHPPQTVPMVGPVQPMSGRMLPVAPPGAMPGAPPGVMPPMMGPRHPGAPNGMYTGPPPPP
PPSSAQPDGIPPGPVTSLPVRPPEN
NT seq
3318 nt
NT seq
+upstream
nt +downstream
nt
atggcgactgcgggaactgcggcgactgcggcgggaggcacgggctccgggggatcagcg
gccggccaggcgggacccggggcttcggtgggcaggaagaaggacggaggcccgtcggct
aaattctgggagagcgctgagacggtctcgcagctcgagacggttcggcagtgggtcgga
aaacactacaaaaagtatgttcaggccgactctccgtcctgtaaatctttggctggactg
gtgattcagctgctccagttccaggaggatgcgttcggacgccgagtgagcaatccggcc
ctcaccaaactccctgcgaagagcttcttagactttaaagctggtggagctctgtgtcac
atcctgggatctgcttataagttcaagagtgaacagggatggcgtcgattcgatttgcag
aatccatccaggatggacagaaatgtggaaatgtttatgaatattgagaaaactcttgca
cagaataactgtctgactcgaccaaacgtgtacatcgcatctgacgtggaccaaaaacag
gctagcaaactgaaagacatcattaagagacatcagggatccatcactgatgacaaatcc
aaagccacacatctcatatatccttctccagctcagacagaggaagaggagtggctgcgt
cccgtcatgcgcaaagacaaacaggtgctggtgcactgggggaattatccagacagttac
gatacctgggtttctgccagtgacatggacggtgagattgaggatcctccgagctcagag
aaaccgtggagggtgcacgccaagtgggtcctggatacggacgcgtttaacgagtggatg
aacgaggaagattacgaagtagacgagaacaggaagccggtgatcttccgccagcgcatc
ttccctaaagaggaggagtcttcccgtacacctgatcgtaaggagcgaaagtcactggct
ggaggaaagaagaggcgtcgctccccatcccccccgagcacccccgctgagtcccgcaag
aagggcaacaagaaggggaacaccgggccacactggaagcgcagaggacatcgtgatgat
gatgagcaggacgaagatctcaccaaggatatggaggatccatctcctgttccaggaatg
gaggaggtttcactgcctaagaatgtgaatcagaagaaggacagtgagaacgccccggtt
aaaggaggaaccatggctgatctggatgaacaggaagacggctctgtgggttctggtggg
aaggatgatgatgaacagggaaaantggaggtaaaccgtctcatggactctggtgaagat
aacgtgaccgaacaaacgcatcacatcatcattcccagctactcggcctggttcgactac
aactcgattcatgaaatagagagacgagccttaccagagttctttaatggaaaaaacaag
tctaaatctccagagatatatctcgcgtatcgtaacttcatgatcgatacgtaccgactg
aaccctcaggaatatctcacctccacctcctgcagacgcaacctcactggagatgtgtgt
gctgttatgagggtgcacgcattcctggagcagtggggtctcattaattatcaggtggat
gctgacagcaggccgatgccaatgggtcctccacccacaccccactttaacgttcttgct
gatactccatcaggtcttgtccctctccaccatcgccccccgcaggttccctcggctcag
cagatgctcaacttcccagagaaaagcaaagaaaaacccaccgacctgcagaactttggc
ctcaggacagatatgtactcgaagaagaatcctaagagtaaaggaggaagtggtacccga
gaatggactgagcaggaaactctgctgctgttagaggctttggagatgtataaggacgac
tggaacaaggtttcggagcatgttggcagcaggacacaggacgagtgtatccttcatttc
ctgcggctgcctattgaggacccgtacctggagagttcggaggcgtctctcgggcccctg
gcgtatcagcccgtccctttcagccagtcaggaaaccctgtgatgagcaccgtggccttc
ctcgcatccgtggtggaccccagagtggctgcagctgccgctaaggctgctctcgaggag
ttctcccgtgtgagagaggaagtcccagctgagctggtcgaggctcatgtgaagaaggtt
caggaggcagcgaggagcacagggaaagtggacccctcctatggcctggacagcagcggc
atcgcgggaacagctccggacgagccggagaaaaccgaaaccacagaaaccgagaagatg
gaaacagattcggagactcagcagggagagaagactgagtctaaggaggagacagagaaa
gtgagtgaggcagcagagaaaccagcggagggagagaaagtgaagagtgagatggcagag
aaacccgagggtgaggaagatgagggtgatggtgtagagctgaaggaagtcggtgctgct
gatgaaaaagagaaagaggaggcgatggaagtgactgaaggagtgaaggagggagaggaa
accacgacagaggatagcaagaagaagctggagcttgatatcggagagggaaatgttgcc
actgctgcggctgccgctctcgcctctgctgccacaaaggctaagcacttggcagcagtg
gaggagaggaagatcaagtctctggtggctctgctggtggagacacagatgaagaagttg
gagattaaactgcgtcactttgaggagctggagaccatcatggaccgagagaaagaggcg
ttggagttgcagagacagcagttgttgacggagaggcaggcgttccacatggagcagctg
aagtatgctgagatgaaagcacgtcagcagatggagcaacaggcagcagcagccgctgca
gctcagcatggacagttagccccgccctctcaacatggtgctcctcccccatctcatata
ccgcctccaggtatgcatccggggcctggataccccccgatgcaccaccccatggggccg
catcatcctccacagacagtaccaatggttggaccagtgcagcccatgtctggccgtatg
ctgcccgttgccccccctggtgcgatgcccggagcaccaccaggtgtgatgccccctatg
atgggccccaggcaccccggggccccgaatggcatgtacacggggccgcctcctcctcct
cctccttcgtctgcacagcctgatgggataccgccaggtccagtgacatcacttcctgtt
cgccctcctgaaaactaa
DBGET
integrated database retrieval system
