Silurus meridionalis (southern catfish): 124375279
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Entry
124375279 CDS
T08004
Symbol
pan3
Name
(RefSeq) PAN2-PAN3 deadenylation complex subunit PAN3 isoform X1
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124375279 (pan3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smeo03019
]
124375279 (pan3)
Messenger RNA biogenesis [BR:
smeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
124375279 (pan3)
mRNA degradation factors
3'-5' decay
Pan complex
124375279 (pan3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pan3_PK
zf-CCCH
zf_CCCH_4
zf-CCCH_4
Torus
Pkinase
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
124375279
NCBI-ProteinID:
XP_046689372
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Position
21:complement(2672505..2689363)
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AA seq
802 aa
AA seq
DB search
MNSGLPVSAATLSGVGIPGVKVKFCRYYAKDKTCFYGDDCQFLHEDPSATGAMHGGGSGS
PVTLALAGGAVSTAVAAVSGYALAGNAVATCPSGAPVGVAKKSDSLGLAGAALDGQLLSI
PGMDSVALSDANLTNSYFSSSFIGVNGFGSPAESKYSMMQRMTSSSSSPSLLNDGAKNFS
HSAHDPVSSPTSSLFSDFGALSITQRRKAPNPAATEFVPKGAPRMSTMSQGAVQAFPSPL
FPHPGLSNSAAVGLAPGMSLSAGSSPLHSPKITPHTSPAPRRRSHTPNPNQANYMVPTTA
SEQGGAAHIIQKETVGGTTYFYTDNTPAPMAGMVFPTYHIYPQTAPHVAYMQPKANAPSF
FMADELRQELINRHLITMAQIDQSENAGVPSEVDSYHSLFPLEPLLPPNRLQKTSNFSYI
TSCYKAVNSKDDLPYCLRRIHGFRLVNTKCMMLVDMWKKIQHSNAVTLREVFTTKAFGDH
SLVFSYDFHAGAETMYSRHFNDPTADSYFTKRKWGPHEPPPRQHAGLLPESLIWAYIVQL
SSALRTIHTAGLACRVMDPSKILITGKTRLRVNCVGVFDVLTFDNSQTNHLALMPQYQQA
DLISLGKVVLALACNSLAGIQRENLQKAMELVSINYSSDLKNLILYLLTEQSRLRSVNDI
MPMIGARFYTQLDASQMRNDVIEEDLAKEVQNGRLFRLLAKLGTINERPEFQKDPTWSET
GDRYLLKLFRDHLFHQVTEAGTPWVDLSHIVSCLNKLDAGVPEKISLVSRDEKSVLVVTY
SDLKRCFDSTFQELLAAANGSL
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atgaatagtggactcccggtctcggctgctacgctcagcggtgtcggaataccgggcgtc
aaggtgaagttctgccgctattacgcgaaagataagacttgcttttatggcgacgactgc
cagtttttgcacgaggatccttccgcgacgggcgccatgcacggaggaggcagtggcagc
ccggtgactttagccctcgctggcggggcagtgagcaccgcggtggcggctgtgtcaggg
tatgcgctcgctggcaacgcagtggcaacttgtccgagcggagctccggtgggtgtcgcc
aaaaagagcgattctcttgggcttgcaggagcggctctggacggccagttgttgagcatc
cctggaatggacagtgtggcgctcagtgacgcaaatctgaccaactcctatttcagcagc
agctttatcggagtcaatgggtttggaagtccagccgagtccaaatactcaatgatgcag
agaatgaccagcagcagcagctccccgagtctccttaatgacggtgccaagaatttcagc
cacagcgctcatgatcctgtaagttcccccacatcctccctgtttagcgactttggtgct
ttaagcattacacagaggagaaaggctcctaaccctgctgccacagagtttgtccctaaa
ggagcaccacgtatgtccacgatgtctcaaggggccgtacaggcctttccttcgccgcta
ttcccccatcctggcctgagcaactcggctgcagtgggactcgcccccggtatgtctttg
tctgctggctcgtctcctctacactcgcccaaaatcactccccacacctcacctgcccct
cggcgccgcagccacacccctaaccccaaccaagccaattacatggtacccacaacggcg
tcagagcaaggaggtgctgcccacatcatccaaaaggagactgtaggaggaaccacctac
ttttacacagacaacacccctgctcccatggcgggaatggtgtttccaacgtaccatatc
tacccacaaacagcacctcatgtggcgtacatgcagcccaaagccaatgctccatccttc
tttatggctgatgagctcagacaggagttgattaacaggcatttgatcacaatggcccaa
atcgatcagtctgagaacgcaggagtcccatctgaggtggacagctaccacagcctcttt
cccctggagcctcttctgccccccaaccgactccagaaaaccagcaactttagttacatc
acttcctgttacaaggcggtcaacagcaaagatgacctgccgtactgtttgaggcggata
catggcttcaggctggtgaacaccaagtgcatgatgctggtcgacatgtggaagaagatc
caacactccaacgctgtgactcttcgagaagtctttaccaccaaggcttttggagatcac
tcgttggtgttctcttacgactttcatgctggggccgagaccatgtacagcaggcacttc
aacgacccaacggctgactcttatttcacgaagaggaagtggggaccgcatgaaccacct
cctcgacagcatgccggtctgctgccagagtctctgatctgggcctacattgtacagctg
agctctgccctgcgcaccatccacactgccggcctggcatgcagggtcatggaccccagc
aagatcctaatcactggaaagactcggttacgtgtgaactgtgtaggagtgtttgatgtc
ttaacatttgataacagtcagaccaaccacttggccctcatgccccagtaccagcaagca
gatctgatctctctggggaaggtggtgttggcactggcctgcaactctctggctggcatt
cagagagagaacctgcagaaagccatggagcttgtgtccatcaactactcatccgacctc
aagaacctcatcctgtacctgcttacggagcagagtcgcctgcgcagcgttaatgacatc
atgccgatgatcggagcaagattttatacccagctggatgcttcacagatgaggaatgat
gtcattgaggaggatctagccaaggaggtgcaaaatggccgcttgttccgacttctggcc
aaactgggaaccatcaatgagagaccagaattccagaaggatccaacgtggtctgagacg
ggagatcgctacctgctgaagctcttcagagatcacctgttccaccaggtgactgaagct
ggcacaccctgggtcgacctgagccacattgtgtcttgtcttaataaactggatgctgga
gtgcccgagaagatcagtctggtgtctcgggatgagaagagtgtgctggtggtgacctac
tcagacctaaagcgctgctttgacagcaccttccaggaactgctggctgctgccaacggc
tcactgtag
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