KEGG   Silurus meridionalis (southern catfish): 124375336
Entry
124375336         CDS       T08004                                 
Symbol
dcaf11
Name
(RefSeq) DDB1- and CUL4-associated factor 11
  KO
K11801  DDB1- and CUL4-associated factor 11
Organism
smeo  Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:smeo00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:smeo04121]
    124375336 (dcaf11)
Ubiquitin system [BR:smeo04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     124375336 (dcaf11)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WDR55 WD40_MABP1-WDR62_2nd Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_TEP1_2nd EIF3I Beta-prop_EML Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_C Beta-prop_HPS5 Beta-prop_WDR75_1st Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 Beta-prop_RIG_2nd Beta-prop_SCAP Beta-prop_EIPR1 WDR90_beta-prop_4th Beta-prop_SPT8 NBCH_WD40 Beta-prop_DCAF4 WD40_MABP1-WDR62_1st PROPPIN Beta-prop_IFT140_1st Beta-prop_LRRK2 Beta-prop_RIG_1st PmrD
Other DBs
NCBI-GeneID: 124375336
NCBI-ProteinID: XP_046689511
LinkDB
Position
21:5067532..5079541
AA seq 544 aa
MGSQSSSGMSGRGSSGNPDQSEPESNQNQATTTQRTRRGTERASASEEDVDLAQVLAYLL
RRGQVRLVHGSGATGLQLVQSISDSDEDSDGAWEGRLGHRYDPPVDSHPDTQELDRSEIR
TQILLATASSHLKKQHSFTHMLNQREQGRCRGSGFSHGECSRIRSHFLPNHVAHKDTYQQ
KAFCGVYSEDGNLFLTACQDQNIRLYDTSRGRFHLKRTMKARDVGWSVLDVCFTPDSRSV
LYSSWSDFIHVCNIDGESETHTALELNPDERRFCVFSLTASMDSREVLGGANDGCLYVFD
RELNKRTLKIDAHEDDVNAVAFADVSSQLLFSGSDDALCKVWDRRTLREHSPQPVGVLAG
HRDGITFIHSKGDARYLISNSKDQTIKLWDVRKFSPKEGLAASRLAVTQQNWDYRWQQVP
QRALKRHKLTGDTSVMTYRGHGVLHTLIRCRFSPEFSTGQKFIYSGCSTGKIIIYDVLTG
QVVSRLTGHEACVRDVSWHPYQDNIISSSWDGAIRLWEHRHTHLLDKDRDRANEWRPEEK
MEEK
NT seq 1635 nt   +upstreamnt  +downstreamnt
atgggctcccagtccagttctggcatgtccggtcgcggctcaagcggaaacccggaccag
tcagaacccgaatcgaaccaaaaccaggctactacgacccagaggacccgcaggggaacc
gagagagcgtcggcatctgaggaggacgttgatctagcgcaagtgctggcgtacctgctg
aggaggggccaggtgaggctggtccatggcagtggagcgacagggttacagcttgtccag
tccatatcggattcggacgaggacagcgatggagcatgggagggacggctaggacatcgc
tacgatcctcctgtggattcacatccagacactcaggagctggaccgcagcgagatccgc
actcagatcctattagccacagcgtcctcacacctgaaaaagcagcacagcttcacacac
atgcttaatcagcgggaacagggtcgctgtcgtgggtctggtttctctcatggggaatgc
agccgtattcgctcacatttcctgcccaaccatgtagcccacaaagacacctatcagcag
aaggcgttttgcggcgtgtacagcgaagatggaaaccttttcctcactgcttgtcaagat
cagaatattcggctgtacgacaccagtcgtggtagattccacctgaagcgcaccatgaag
gcccgagacgtaggctggagtgtgttagacgtgtgtttcacgcctgattcgcgctctgtt
ctctactccagctggtctgatttcatccatgtgtgcaatatagatggcgagagtgaaacg
cacaccgctctggaactcaatccagacgaaagaaggttctgcgttttctcgctcacagcc
tcaatggacagcagagaagttctaggcggagcgaacgacggctgtttgtatgtatttgac
cgcgagctgaacaaaagaactttgaaaatcgacgctcacgaggatgacgtgaatgccgtg
gcgtttgccgacgtctcgtctcagctgctgttctcgggcagcgatgacgcgctgtgtaaa
gtgtgggacagacgcacactaagagaacactcacctcaaccagtcggggtgttggcagga
caccgagacggaatcactttcatacacagcaagggtgatgctcggtatctgatcagtaat
tcaaaggatcagacgattaagctatgggatgtgaggaagttttctcccaaagaaggcctc
gctgcatccagactcgccgtcacacagcagaactgggactatcgctggcagcaggtccca
cagagagctttaaagaggcacaaactgaccggtgatacatccgtgatgacatatcgaggt
cacggcgttcttcacacgctcatccgctgccgtttctcccccgagttcagcacagggcag
aagttcatctacagcggctgctcgaccgggaaaatcatcatttatgacgtgctgacgggc
caggttgtgtccaggctgaccgggcacgaggcgtgcgtgagagatgtcagctggcatccg
taccaggataacatcattagcagctcttgggatggtgcaattcgcttgtgggagcacagg
cacactcacctgctggataaagacagagaccgggcgaacgaatggaggccagaagagaag
atggaggaaaagtga

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