Silurus meridionalis (southern catfish): 124375512
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Entry
124375512 CDS
T08004
Symbol
topbp1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1 isoform X1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
124375512 (topbp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smeo03032
]
124375512 (topbp1)
03400 DNA repair and recombination proteins [BR:
smeo03400
]
124375512 (topbp1)
DNA replication proteins [BR:
smeo03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
124375512 (topbp1)
DNA repair and recombination proteins [BR:
smeo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
124375512 (topbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
ECT2_BRCT0
BRCT_TopB1_SLF1
Motif
Other DBs
NCBI-GeneID:
124375512
NCBI-ProteinID:
XP_046689893
LinkDB
All DBs
Position
21:8259099..8280193
Genome browser
AA seq
1521 aa
AA seq
DB search
MSEASRDVYMVKFVERNAHKSELGLKAYEAIVELQSEKYVQTIDEEAVLELEHNDKSLYV
FSDFTSDAFEHCRKLGCRIVSPLVVLFCLQQQRCVPKAEQPVYNMAMADVTVSCTSLDKE
ARTEVMDLVQLMGGRVYRDLNVSVTHLVAGEVGSKKYLVAASLGKPILLPTWVRACWEKS
QDSLFRYTDLRSEDYQCPVFKGCTLCVTGLSTVERKEVQRLCEQHGGSYTGQLKMNECTH
LIVSEPSGQKYEFAKKWNVYCVSIHWLFDSIEKGFCQDESRYAVEREDKRKEKHGRPNTS
TPTGSNKADGPSLLGLSHISNVSINVNETAMTTATMSRIETADPIDTFDATLCPADDLLD
GCKLYLCGLVGKRLEKLRRLVNSAGGLHFNQLGEELTHILMGEPDQDVKSFLTKASHRPH
IVTVQWLLDSFSRGSLLPVEKYFHPSFLPPAPAQVDIPAPRPATSHPSRPSFAAPPAPSP
NRHARAEEELLSQYVDNNQTVVEKPPPAEKESKTCRSELPVPDVPGHDSTVAESSEGGMF
IGKRFLLVGFDTEAEAQLSMLVVENYGKVLVGRFRGVADYAIVPLLGCEVEATVDEVVTE
TWLAMCVEQQCILPVSSHPLFTPVVVKEGCSPLRDCVLSVSQFTGAERESLIQLARHLGA
SVQDYFVRTANQRKGMLASTHLVLQTPEGTKYQAAQKWGLPAVTIRWILESGRTGKHAEE
SRYLVDLPPSPEHSEGSFIGASQKVAVPPVAMRLSPEIPLLGPQSSASVTPLDTGRLQSR
TVHSVLRKMKKGEEGAVKVTTPAQEESRGSLQKELHLDTPSRFLSRDRLFGPSFNIKDVY
DHLKTPGNKPQQDAGAETPLSEVIERNLKAAVANSNRSHVMSLAALTASPQLTKEPEPKI
PEQVEEKPSAPLARVVVCVSKKLSKKQNELNAMAASLGADFRWSCDDSVTHYIYQGKVGD
NTKEYRGVKERGLHIVSQHWLQACTEEQKRVPESLYPFTFNPKRSLMLSQVTDSNQKSPP
LSTTRSSLQALNDDDTLMSTEDITADISTPQREPAEKEPTSSSRKDLTETLEMRENLQRQ
LQEIMSATKLTSGRRASSRLARVGSDGLDSPHTPEILGRMGRRSRTLEALRMSRQAAVDV
NTEASQSEQIVWDDPTAREERAKLADNLQWPGSPSQHSEPLAILPPPHTDQNARDTMTDS
ELVEMAACDVIEEHMKRTVTPSRVNTEHKVARISEAPSTAFLNSRASIPFELQSEEESEK
KVVKKEPPRFQLSSLNPQERIDYSHLIEELGGILLEKQCFDPSCTHIIVGYPLRNEKYLA
AMAAGKWILHRSYLEACRAEGHFIPEEDYEWGSHSILDALPSINSQQKRLALAALRWRKS
LQGRTEKEGAFGGWTVMLNIDQARDAGFRRLLQSGGAKVLPSPSPSLYKETTHLFADFSR
LGPNDVRVDVAEAMGYGVKCLRPEYIADYLMQEPSPPVDAYYLVGAAANGIPENSHQGQN
TPSRKRKASGDTSAVKKSRVR
NT seq
4566 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaagcgagccgcgatgtgtacatggtgaaatttgttgaacgtaatgcacataaa
agtgagcttggcctcaaggcttatgaggccatagtggagctgcagtctgagaaatatgtg
cagactattgatgaagaagccgtgctggagttggagcacaacgacaagtccttgtacgtg
ttcagtgatttcaccagcgatgcatttgagcactgcaggaagctgggatgcaggatagtg
agtccactggtagtgctgttctgcttgcagcaacagcggtgtgttccaaaggcagaacag
ccagtttacaacatggccatggctgatgttacagtgtcttgcaccagtctggacaaagaa
gcacggacagaagtgatggacttggtgcagctgatgggtgggcgggtctaccgggatctc
aacgtgtctgtcactcatctggtggcaggtgaggtgggcagtaagaagtacctggtggca
gccagcctggggaaacccatccttctgccaacctgggtcagagcatgctgggagaaatct
caggacagtttgttccggtacacagacctgcgttcggaggattaccagtgccccgttttt
aaaggttgcactttgtgtgtgacgggtctgtccactgtggaacgtaaagaagtgcagagg
ctgtgtgagcagcatggtgggagctacactggccagcttaagatgaacgaatgcactcac
ctcattgttagcgaaccctcaggtcagaagtacgaatttgcaaaaaagtggaacgtgtac
tgtgtctccattcactggctctttgacagtattgagaagggcttctgtcaggatgagagt
cgttatgctgtcgagagagaggacaaaaggaaggagaaacatggcagacccaacacctcc
actcctactggctcaaataaggcagatggaccatctttgcttggactgagtcatatctca
aatgtcagtataaatgtcaatgaaacagccatgacaactgcaacaatgagccgcatagag
accgcagatccaattgacacttttgatgctaccctctgtccggcagatgacttattagat
ggctgcaagctgtatctgtgtggtttggttgggaagaggttggagaaactgcgccggctg
gtaaactctgcaggaggcctgcatttcaatcagcttggtgaagaacttacacacatcttg
atgggagaaccagaccaggatgtcaaaagctttcttaccaaagcttctcataggccgcat
atcgtcacagttcagtggctgctggacagtttttctcgtggctctctgctaccagtggaa
aaatatttccacccttcattccttccacctgctccagcccaagtggacattcccgcccca
cgccctgctacctcacacccttctaggccttcttttgctgccccacctgcccccagccct
aatcgacatgctagggctgaggaagagttactctcacaatacgtagacaataatcagact
gttgtggagaaacctccacccgcagaaaaggaaagcaagacttgtaggtctgaactccca
gtcccagatgtgccagggcatgactccactgtagctgaatcctcagagggaggcatgttt
attggaaaacgtttcctccttgtaggttttgatacagaagcagaggcacagctctcaatg
ctggttgtagagaactatggaaaggttctggtcggccgtttcagaggcgtggccgattat
gccattgttcctctgctcggctgtgaggtggaggccacagtggacgaagtggtcaccgag
acctggctggcaatgtgtgtggagcagcagtgtattctgccagtatcatctcatccattg
ttcacaccagtcgtggtaaaggagggctgctctcctcttcgagactgcgtgctctcagtt
agccagtttacgggagcagaaagagagtctctcattcagcttgcgagacatctaggagca
agcgtccaggattattttgtgcgcactgctaatcagaggaaaggcatgctggctagcact
caccttgttctgcagactcctgagggcactaagtaccaggcagcacaaaaatgggggctg
cctgctgtgaccatacgctggatcctagagtctggcagaaccggaaaacatgccgaggag
tcacgctatctggtggatctgccgccatctcctgagcacagcgagggcagtttcattggc
gcatctcagaaagtagcagtccctcctgtggctatgcgtctttctccagagattcctctg
cttggcccacaaagcagcgcttctgtaacaccgttggacacaggccgtctgcagagccgc
accgtccactccgtcctccgcaaaatgaagaaaggtgaggagggagcggtgaaggttacg
accccggctcaggaagaaagcagagggagcttgcagaaagagcttcatcttgacacgccg
tctcgcttcctcagtcgagacaggctttttggaccttcgtttaacatcaaggatgtgtat
gaccatttaaaaacacctggtaataagcctcagcaagatgcgggagcggagactccccta
agtgaggtgatcgaaaggaatttgaaggcggctgtggccaacagcaaccgtagtcatgtc
atgagcctggctgctctgactgcaagtcctcaactgaccaaagagccggaacctaagata
cctgaacaggtagaggaaaaaccttcagcaccacttgccagagtggtggtttgtgtgagt
aagaaacttagcaaaaaacagaatgagttaaatgcaatggcggcatccctcggagcagac
tttaggtggtcttgtgatgattcggtcacccactatatctatcagggtaaagtgggagac
aacactaaagagtacaggggagtgaaggaaagaggcctgcacatagtgtcccagcactgg
ctgcaggcgtgtacagaggagcagaaacgagtgcctgagtcactctacccttttaccttt
aaccccaaaaggagcctgatgctaagccaagtgacggacagcaaccagaaatctcctccc
ctgtccacaacccgctccagtctccaagctctcaacgatgatgacacactgatgagtact
gaggacataacagcagacatttctactcctcagagagaacctgcagagaaagaaccgacc
agcagcagcaggaaagacctcacagaaactttagaaatgagggagaacttgcagaggcag
ctacaggagattatgtccgccacaaagctgaccagtggtcgacgagcctcctctagattg
gcccgagtgggttcagatggtctagactccccccacacaccagagattttgggccgaatg
gggagacgcagcaggacgctggaggccttacgcatgtcccgtcaggctgcggtggatgtg
aacacagaagcgtctcagagtgagcagatagtgtgggatgaccctacggcgagagaggag
agggcaaagctggctgataacctgcagtggccgggcagcccttcccaacattcagagcct
ctcgccatcctccctccaccacacactgatcaaaatgctcgggacaccatgactgactct
gaactggtggagatggctgcctgtgatgtaatagaggagcacatgaaaaggacggtgacg
ccatcaagggttaacactgaacataaagtagccagaatttctgaagctcctagcactgct
tttctcaactccagagcttcaattccatttgagctacagagtgaggaagaaagtgagaaa
aaggtggtgaagaaggagcctccacgcttccagctgtcttcacttaacccacaggagcgc
attgattacagtcacctcatagaggagctgggtggtatcttactagaaaagcagtgtttt
gaccccagttgtactcacatcattgtgggttatccactgaggaatgaaaaatacctggca
gccatggcagctggcaaatggatccttcaccgctcgtacctggaagcctgtcgtgctgag
ggacacttcataccagaggaggattatgaatggggtagccactctattctggatgctctt
ccctctataaactcccaacagaagagactggcgctagcagctttgcgctggagaaagtct
ttgcagggtcgcacagaaaaagagggtgcatttggtggctggacagtgatgttgaatata
gaccaggccagagatgccggatttcgaagactgctgcagtctggaggcgcaaaggttttg
ccaagcccatctccctctctgtataaggaaaccactcatctctttgccgacttcagccga
ctgggaccaaatgatgtgagagtggatgtggctgaagccatgggttatggcgttaaatgt
ctgaggcccgagtacattgctgattacctcatgcaggaaccctcaccaccagtggatgcg
tattatcttgtcggagcagcggcgaacgggattcctgagaactcgcaccaaggccagaac
acaccctcacgcaagcgcaaggcctcaggggacacatccgccgtgaagaagagtagggtt
aggtga
DBGET
integrated database retrieval system
