Silurus meridionalis (southern catfish): 124375592
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Entry
124375592 CDS
T08004
Symbol
rad54b
Name
(RefSeq) DNA repair and recombination protein RAD54B
KO
K10877
DNA repair and recombination protein RAD54B [EC:5.6.2.-]
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
124375592 (rad54b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smeo03400
]
124375592 (rad54b)
DNA repair and recombination proteins [BR:
smeo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
124375592 (rad54b)
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
SWI2_SNF2
AAA_34
Motif
Other DBs
NCBI-GeneID:
124375592
NCBI-ProteinID:
XP_046690037
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Position
21:complement(11565612..11586842)
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AA seq
937 aa
AA seq
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MRRSAAPSRLLQGNAAKKPRFVPPAPVHTGAGLLSNPGPGLMPNAMPISSPGQTPTSTPK
PAANNVLNKVQKSLTERATGTPGAAKVSVMGKALARVLSVVAQEERNENDADSLSFPLDL
EQPPDSPSAQQPGVQCTHTTTTSNSPTARYYSVMWCKASSRKHKRWEGDAVLVATGRSVV
LKDMEGRNIGRGSGYKASELESLCEGQTLMVGGKQLEVMGIISDEDYAKGRCFQDAIVED
SLQTTAKAPVEHQRPQLAKPFARPALKNATMGVPKPEGPVCKPRHDPNSPGALVMPRPST
NHQWHCNKNGLQVVDVVVDPHLTNHLRPHQKEGVVFLYECLMGMRLAGRCGAILADEMGL
GKTLQCVCVLWTLLRQGPYGGRPVLKRGLVVCPGSLVKNWAVEFNKWLGKERISVYTVDQ
GNRVEDYISCPRSPVMVISYEMLLRSVDSLKKLEFGVVICDEGHRLKNSNIKTASALTAL
ACERRVILTGTPVQNDLQEFYSIIEFVNPGILGTSAAYRKIYEEPILKSRQPTCTEEEKC
IGEERAAELARLTGAFTLRRTQEIINCFLPGRLEWTVFCRPTELQVQLYNELLSSRPVRA
CFAAASTHAFTQSPHLACINALKKLCNHPGLLYNMIKEKKNDDLYDSVCVELFPETYTTG
SFCTGDSGKLLVLADLLTAIKHVNCTDKVVLVSNYTQTLDLLQDFCAHLGYTWCRLDGQT
PVAQRQRIVDSFNRLDSAHFLFLLSSKAGGVGLNLVGASHLVLYDMDWNPANDIQAMARV
WRDGQKKTVHIYRFLTTGTIEEKIYQRQVSKQGLSGAVVDLGKKGEHISFSAEELRDLFT
FDPETDCLTHDLLGCKCSGDGTLPGVVEDASLATGRVCQLGRRSDGASVPQRVSMSELMQ
WKHFSGTLSSYGDVYLDHAHSNITYAFQSTSRTQEMA
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atgcgcaggtctgcggcaccgagtcggctcctgcagggtaatgctgcaaagaagccacgg
tttgtacctcctgccccggtgcacacaggagcagggctattgtccaacccagggccaggg
ttaatgcccaatgccatgccaatatcaagcccaggacaaacaccaacatcaacacccaaa
ccagcagctaacaatgtcctcaataaggtgcagaagagcttgactgagagggcaacaggc
actccaggtgctgcaaaagtctcagtaatgggtaaggctttagccagggttctgagtgtc
gttgctcaggaagagcggaacgaaaatgacgctgactctctgagcttccctttggattta
gagcagcccccagattcaccctcagcacaacagccaggtgtacagtgtacacacaccacc
accacctctaatagcccaacagcacgatactacagtgtaatgtggtgcaaggcatcctcg
aggaagcacaaacgctgggaaggtgatgctgtactcgtggccacaggacgcagtgttgtg
ctgaaagacatggaaggaagaaatattggacgaggttcaggttacaaagcgtctgagctg
gagagtctgtgtgagggccagactttaatggtaggagggaagcagcttgaggtcatgggg
atcatctcagatgaagattatgcaaagggacgatgttttcaagatgccattgtggaggat
tctttacagacaaccgctaaagcaccagtggaacatcagagacctcagctggccaaaccc
tttgccaggccagcactaaagaatgcaactatgggagtgcccaaacccgagggtcctgtc
tgcaagcccagacatgaccctaatagtccaggagcccttgtgatgccccgaccctcaacc
aatcaccagtggcattgtaacaaaaacggacttcaagtagtggacgtagttgtggaccct
cacctaacaaatcatctgcgaccacaccagaaggagggtgtggtctttctatatgaatgc
ctcatgggaatgaggttggcgggccgatgtggagccattttagcggatgagatgggattg
gggaagacactgcagtgtgtgtgtgtgttgtggactctactgaggcaggggccttatggt
gggcggcctgtactgaagagagggttggtggtttgtcctggtagcctggtaaaaaactgg
gctgttgaattcaacaaatggcttggcaaagaaaggatcagtgtttacactgttgatcag
ggcaatcgcgtggaggactatatatcctgtccccggtctcctgtgatggtaatcagttat
gagatgcttctgcgctctgtagacagcttaaagaagctggagttcggtgtggtcatctgt
gatgagggccatcggcttaagaacagcaatatcaagacagccagtgctctcacagccctg
gcctgtgagcgtcgggtgatacttacaggcacccctgttcaaaatgatctccaagagttt
tactccattattgagtttgtgaatccgggcattttgggaacatcagcggcttacagaaag
atttatgaagaaccaatcctcaaatctcgccagcccacctgcaccgaggaggagaagtgc
ataggtgaagagcgagcggcagaacttgctcggctgactggcgcgttcacgctacgaagg
actcaagagatcattaactgtttcttacctgggcggctggaatggacggtgttctgccgg
cccacagagctgcaggtgcagctgtacaacgagctgctctctagccgacctgtcagggcc
tgtttcgctgcagccagcacacacgccttcacacagagccctcaccttgcttgcattaat
gctctgaagaagctgtgcaaccaccctgggcttctttacaacatgataaaggagaagaag
aatgatgatttatatgacagcgtctgtgtagaactttttccagaaacctacaccactggt
agtttttgcacaggagactctgggaaattgctggtgctcgcagaccttttgactgctata
aagcatgtcaactgcacagacaaggttgttctggtgtctaattacacacagactcttgat
ctgctgcaggacttctgtgctcaccttggttacacctggtgtagacttgatgggcagaca
ccagttgctcagcgccagcgcattgtagactcctttaaccgcttggactctgcccacttc
ctgtttcttctcagttcaaaggctggaggagtggggcttaatcttgttggtgcctctcat
ttggttttgtatgatatggactggaacccagctaatgacatacaggccatggcccgagta
tggagagatgggcagaagaaaacagttcacatctacagatttttaacaacaggtaccata
gaggagaagatctatcagagacaggtgagtaagcaggggctttctggagctgtggtggac
cttggtaaaaagggtgagcacatcagtttctcagctgaggagctgcgtgaccttttcacc
tttgaccccgaaaccgactgtctcactcacgatctgcttggctgcaaatgctcaggggac
ggaacattaccaggtgtggtggaggacgcatccttggctaccgggagggtgtgtcagttg
ggtcgtcgttctgatggtgccagtgttccacagagggtcagcatgtctgagcttatgcag
tggaagcatttttctggaactctttcatcatatggtgacgtgtacttggaccatgcacac
agtaatataacgtatgccttccagagcacttccagaacccaagaaatggcataa
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