Silurus meridionalis (southern catfish): 124375619
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Entry
124375619 CDS
T08004
Symbol
mex3a
Name
(RefSeq) RNA-binding protein MEX3B
KO
K15686
RNA-binding protein MEX3 [EC:
2.3.2.27
]
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smeo03019
]
124375619 (mex3a)
04121 Ubiquitin system [BR:
smeo04121
]
124375619 (mex3a)
Enzymes [BR:
smeo01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
124375619 (mex3a)
Messenger RNA biogenesis [BR:
smeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
124375619 (mex3a)
Ubiquitin system [BR:
smeo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
124375619 (mex3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KH_1
KH_Vigilin
zf-C3HC4_3
KH-I_KHDC4-BBP
KH_2
zf-RING_2
zf-C3HC4
RING_XB3-XBAT31
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
124375619
NCBI-ProteinID:
XP_046690089
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All DBs
Position
21:17247441..17255030
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AA seq
548 aa
AA seq
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MGGTNSHREGIREAEEEEGGGCAAFSSLALRVFVSHSLLAMPSLLVLSGIMEKNGGYGSE
LAASGFGTESLLAPPDEEEEESRALRVALGQLSLLGLGESEEGAGVQERSNNNNNNHHHH
HGHGHANSSSVGGGGGGGGGGAGEAGILQGKSKLCALYETSGSETKARGCNITECVPVPS
SEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFLITGRKEDVALARREIISAAEHF
SMLRASRNKLGVSFNGSPPALLPGQTTIQVRVPYRVVGLVVGPKGSTIKRIQQQTCTYIV
TPSRDRDPVFEITGSPGNAERAREEIEAHIASRTGTLHDHNNENDCLATENGTNGGPENR
LQHAWGLQSGQRKPLASSYRQNFSDAVLGGTGSGSVGVGMGIYSKSDFSAPTNGEKPCSY
FGSEGSQSWGDPDYPKQVAYYVQQRSKSFGGLPLPLTRLSPGLPEPSGTSSPGSTGIGSV
HAQARRAHSEPTTTRDCMTCFESKVTAALVPCGHNLFCMECAIRICELNHPECPVCHTLV
TQAIRIFS
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atgggagggaccaacagccatagggagggcatcagggaggcggaggaggaggagggcggc
ggatgcgctgctttctccagtctcgctctccgcgtctttgtctcacactctttgttagcc
atgcctagcctgctggtgctgtcagggatcatggagaaaaatgggggctacggctcggaa
ctggccgcctccggcttcggtaccgagagcctcctggcgccgccagacgaggaggaagag
gagtcgcgggcgctgcgggtcgcgctgggccagctctctttgctcgggctcggggaaagc
gaggagggcgccggagttcaggagcggagcaacaacaacaacaacaatcaccaccaccac
cacggccacggccacgccaacagcagcagcgttggtggaggaggtggaggtggaggaggt
ggtgctggagaagctgggatcttacaaggcaagagcaagctgtgcgccctgtacgaaacc
tccggttccgagaccaaagcgcgcggctgcaacatcaccgaatgtgtgcccgtgccaagc
tcggaacatgtggcggaaatcgtgggcaggcaaggttgtaaaatcaaagccttgcgggcg
aaaaccaacacctacatcaagacccccgtgcggggtgaggagcccgtctttctcattact
ggtcgcaaggaagacgtggcattggctagacgcgagatcatctcggcagctgagcacttc
tccatgctccgtgcgtcccggaacaagctgggagtgtcctttaatggttctccgcctgct
ctgctgcccggccagaccacgatccaggtgcgcgtgccttaccgtgtagtgggactggtg
gtgggccccaaaggctccactatcaaacgcatccaacagcagacgtgcacgtacatcgtg
actcccagccgcgatcgtgaccctgttttcgagatcactggttctccgggcaatgcagaa
cgggcacgggaggagattgaggcgcatatcgcttcgcgcaccggcaccctccatgaccac
aacaacgagaacgactgcctggccactgagaacggcaccaacggtggaccggagaatcgc
ctacagcacgcatgggggcttcagagcggtcagcgcaagccactggccagcagctaccgg
cagaatttctctgacgccgtgctaggaggcaccggaagtggaagcgttggagttggtatg
gggatttacagcaagtccgacttctcggcccccaccaacggagaaaagccgtgctcctat
tttgggtctgaaggctcccaaagctggggtgaccctgattaccccaaacaggtagcctac
tatgtgcagcagcgctccaagagtttcggaggcctgcccttgcccttgaccagactgtct
ccaggtcttccagaaccttctggtaccagcagtcccggatctactggcataggatcagtc
cacgcccaggctcggcgtgcccacagcgaacccaccacgacccgagactgcatgacctgc
ttcgagagcaaagtgacggccgctctagtgccatgcggccacaacctgttctgcatggag
tgcgcaatccgcatctgcgagctgaaccaccccgaatgccccgtctgccacacgctcgtc
acccaggccatccggatcttctcttaa
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