Silurus meridionalis (southern catfish): 124375846
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Entry
124375846 CDS
T08004
Symbol
pabpc1b
Name
(RefSeq) polyadenylate-binding protein 1b
KO
K13126
polyadenylate-binding protein
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03015
mRNA surveillance pathway
smeo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124375846 (pabpc1b)
09123 Folding, sorting and degradation
03018 RNA degradation
124375846 (pabpc1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smeo03019
]
124375846 (pabpc1b)
03041 Spliceosome [BR:
smeo03041
]
124375846 (pabpc1b)
Messenger RNA biogenesis [BR:
smeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
124375846 (pabpc1b)
mRNA cycle factors
Stress granule specific factors
124375846 (pabpc1b)
Spliceosome [BR:
smeo03041
]
Complex C
Other components
Complex C specific factors
124375846 (pabpc1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_10
RRM_5
RRM_7
RBD_RDR6
RRM_occluded
RRM_3
YflT
HTH_58
Motif
Other DBs
NCBI-GeneID:
124375846
NCBI-ProteinID:
XP_046690479
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All DBs
Position
22:complement(1305668..1313058)
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AA seq
633 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYIKNFGEDMSDDKLKDVFGKYGAAMSIRVMTDDSGKSRGFGFVSFER
HEDAQKAVDEMNGKELNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKN
LDDGIDDERLRKEFSPFGTITSAKVMMDGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVLNPYQPAPPSGYFMAAIPQAQNRA
AYYPTSQLAQLRPSPRWTAQGVRPQHFQNMQATMRPSAPRPQTFSAMRPASQVPRVMSTQ
RVSAQTVGPRPAAAAAASAPVRTIPQYKYTAGVRNPQQHMNSQPQVSMQQPAVHVQGQEP
LTASMLAAAPPQEQKQMLGERLFPLIQNMHSNLAGKITGMLLEIDNSELLHMLESPESLR
SKVDEAVAVLQAHQAKEQAQQKNVTNSTGVPSV
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagcgctccgagctacccgatggcctccttgtacgtcggagaccttcaccaa
gacgtgaccgaggccatgctgtacgagaagttcagcccggccggcgccatcctctccatc
cgcgtgtgcagagacatgatcacccgccgctccctcggctacgcgtacgtcaacttccag
cagcccgcagacgctgagcgcgctttggacaccatgaacttcgatgtgatcaaaggccga
ccggtgcggatcatgtggtctcagcgcgacccctctctgaggaaaagtggtgttggtaac
attttcattaagaatttggacaagtccatcgataacaaggccctgtacgataccttctct
gcgttcggcaacatcctgtcctgcaaggtcgtgtgtgatgaaaacggatcgaaaggttac
ggctttgtgcactttgagacccaggaggcagccgagagagccatcgagaagatgaacggc
atgttgctcaacgacagaaaagtgtttgtaggtcgcttcaaatctcgcaaagaacgcgag
gctgagcttggagccagagccaaggagttcaccaacgtgtacattaagaacttcggcgag
gacatgagcgacgataaactaaaggatgtctttggcaaatacggtgccgccatgagcatc
cgcgtcatgactgatgacagcggtaaatccagaggcttcggtttcgtgagcttcgagagg
cacgaggacgctcagaaggctgtggacgagatgaatgggaaggagctgaacggcaagctg
atctacgtgggccgcgctcagaagaaagtggaacgtcagaccgaactcaagcgcaagttt
gagcagatgaagcaggacaggatgacgcgctaccagggcgtcaacctgtacgtgaaaaac
ctggatgacggcatcgatgacgaacgcctgcgcaaggaattctctcctttcggtaccatc
accagtgccaaggtcatgatggacggaggacgcagcaaaggtttcggctttgtgtgtttc
tcctcgcccgaggaggccaccaaagctgtgaccgagatgaacggccgaatcgtcgccacc
aaaccgctctacgtggctctggctcagcgtaaagaggaacgccaggctcatctaaccaat
cagtacatgcagagaatggccagtgttcgggccgtgcccaatcctgtgctcaacccgtac
caaccagcgcctccgtcagggtacttcatggctgccattcctcaggcccaaaacagagca
gcgtactatcccaccagccagcttgcacagctccgaccgagtccacgctggactgcacag
ggtgtccgacctcagcatttccagaacatgcaggccaccatgaggccctcagccccgagg
ccacaaaccttcagtgcaatgagacctgcttctcaggttcctcgtgtgatgtccactcag
cgtgtctctgctcagacggtgggtccgagacctgcggcggctgcagcagcctctgcaccg
gtgcgcaccatcccgcagtacaagtacacggccggagtgcgcaaccctcagcagcacatg
aactctcagcctcaggtgtccatgcagcagcctgcagtgcacgtgcagggtcaggagcct
ctgactgcttcaatgctggctgcagctccacctcaggagcagaagcagatgctgggtgag
cgtcttttccctctcatccagaacatgcactccaacctggcagggaagatcactggcatg
ctgctggagattgacaactccgagctgctgcacatgctcgagtctccagagtctctgcgc
tccaaggttgatgaggccgttgccgtgcttcaggctcaccaggccaaggaacaggctcaa
cagaaaaatgtgaccaactccactggggtgccaagtgtctaa
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