Silurus meridionalis (southern catfish): 124376054
Help
Entry
124376054 CDS
T08004
Symbol
shmt1
Name
(RefSeq) serine hydroxymethyltransferase, cytosolic
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo00260
Glycine, serine and threonine metabolism
smeo00630
Glyoxylate and dicarboxylate metabolism
smeo00670
One carbon pool by folate
smeo01100
Metabolic pathways
smeo01200
Carbon metabolism
smeo01230
Biosynthesis of amino acids
smeo01240
Biosynthesis of cofactors
smeo04981
Folate transport and metabolism
Module
smeo_M00141
C1-unit interconversion, eukaryotes
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
124376054 (shmt1)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
124376054 (shmt1)
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
124376054 (shmt1)
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
124376054 (shmt1)
Enzymes [BR:
smeo01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
124376054 (shmt1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SHMT
Aminotran_1_2
SHCBP_N
Motif
Other DBs
NCBI-GeneID:
124376054
NCBI-ProteinID:
XP_046690882
LinkDB
All DBs
Position
22:8840092..8847702
Genome browser
AA seq
481 aa
AA seq
DB search
MANNGCCVDKDTWESHNRMLQEPLGINDPEVFEIIKKEKKRQVNGLELIASENFTSRAVL
EALGSCMNNKYSEGYPGQRYYGGTEHVDELERLCQQRALKVYGLDPEKWGVNVQPYSGSP
ANFAVYTAVVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMPYKVNQENGYID
YDRLEENARLFHPKLIIAGTSCYSRNLDYSRLRKIADENGAYLLSDMAHISGLVAAGVVP
SPFEFSDIVSTTTHKTLRGCRAGVIFYRKGVRSVDAKGKETLYNLESLINQAVFPGLQGG
PHNHAIAGVAVALKQALTPEFKVYQTQVLANCKALAAALMEKGYKIVTGGTDTHLILLDL
CPNGTDGGRAEKVMEACAIACNKNTCPGDKSALRPSGLRFGSPALTSRGLVEQDFHMVAE
YIHRCIQLTVEIQKNMNPKATLKEFKETLAQDENYRKRMTEIREEVEAFAAKFPMPGLPE
L
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atggcaaacaacggttgttgcgttgacaaggacacatgggagtctcacaacaggatgctg
caggaaccactcggcatcaacgaccctgaggtatttgagattattaagaaggagaagaag
agacaggtgaacggtttggagctcattgcctctgagaacttcacaagtcgtgctgttttg
gaagctctaggctcatgcatgaacaacaaatactcagaaggatatccaggccagagatac
tacggtggcacagagcatgtggatgaacttgagcgactctgccagcaaagagcactgaag
gtttatggtctagatccagagaaatggggtgtaaatgtgcagccttattctgggtcacct
gccaacttcgctgtgtacacagcagtggtggagcctcatgggaggatcatgggtctggat
ctcccggatggtggacacttgacccatggatttatgactgacaagaaaaaaatttctgcc
acctcaattttctttgagtctatgccgtacaaggtcaatcaagagaacggttacattgat
tacgaccgactagaggaaaatgctcgtctgttccacccaaaactgatcatcgcaggtacc
agttgctactcgcgtaacctggattatagtcgtttgcggaagatagcagatgagaacggg
gcgtacctgctttccgacatggcgcacattagtggacttgtggctgcaggagtggttcca
tctccttttgaattctctgatattgtttccacaactactcataagactctgagaggctgc
agagctggagtcatcttctataggaaaggtgtgcgcagtgtggatgcaaaagggaaggaa
actctttacaacctggagagtttgatcaatcaggctgtgtttcctgggctacagggagga
cctcataatcatgcgattgctggagtggctgtagcactgaagcaagcactgactccagag
ttcaaggtctaccagacacaagtgctggcaaactgcaaggccttggcagcggctctgatg
gaaaaaggctacaaaattgtcactggtggtactgatactcatcttatcttgcttgatctc
tgtccaaacggaactgatggtggaagggcagagaaggtgatggaggcctgtgccattgct
tgtaacaaaaatacctgcccaggtgataaaagtgccctgcgtccaagtggtcttcgtttc
ggctctcctgctctcacgtcacgagggctagtagagcaggatttccacatggttgcagaa
tatattcacagatgcattcagttaacggttgagatccagaaaaacatgaaccccaaagcc
actttgaaggagtttaaggaaacgttggctcaggacgagaactatcgaaagagaatgacg
gaaatccgagaggaggttgaggcttttgctgcaaagttccccatgcctggactgcctgag
ctatga
DBGET
integrated database retrieval system
