Silurus meridionalis (southern catfish): 124376117
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Entry
124376117 CDS
T08004
Symbol
nfatc1
Name
(RefSeq) nuclear factor of activated T-cells, cytoplasmic 1 isoform X1
KO
K04446
nuclear factor of activated T-cells, cytoplasmic 1
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04010
MAPK signaling pathway
smeo04020
Calcium signaling pathway
smeo04148
Efferocytosis
smeo04218
Cellular senescence
smeo04310
Wnt signaling pathway
smeo04625
C-type lectin receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
124376117 (nfatc1)
04310 Wnt signaling pathway
124376117 (nfatc1)
04020 Calcium signaling pathway
124376117 (nfatc1)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
124376117 (nfatc1)
09143 Cell growth and death
04218 Cellular senescence
124376117 (nfatc1)
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
124376117 (nfatc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
smeo03000
]
124376117 (nfatc1)
Transcription factors [BR:
smeo03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) NF-AT
124376117 (nfatc1)
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Gene cluster
GFIT
Motif
Pfam:
RHD_dimer
RHD_DNA_bind
Motif
Other DBs
NCBI-GeneID:
124376117
NCBI-ProteinID:
XP_046691004
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Position
22:18828276..18876993
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AA seq
856 aa
AA seq
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MKSADEDAYSYTPNISLSLPLSSPCIPTQYHNLQTSPSISVSISQPSSFSPSEDMGSMGY
YQSSGPNGAPALESPRIEITAYSQFPEDEVEENNAPVSKRVNSVVTLTLPSGEGYRDPSC
LSPASSVSSRSCHSEASSYESGYSCNYDNSPQNSPWQSPCVSPKGSSSLLSGTLGTTPHQ
SPTGSPRTSVTDESWTAPRGSRSNSPCGGKRKYSFSGNASQKYHPYSPNQSPGLSPQTSP
RLSMTEDTWLPNTNQYTNSAIVAAINALSTDGITDIGEGIPLKARRTSMEHSASVSLKTE
PGSEEMNAKLCQEDYSTSRLAFKKEGYTSFLDVPHHPYWSKPKPYISPTLPALDWQLPSS
SGPYSLQIEVQPKSHHRAHYETEGSRGAVKALAGGHPVVQLHGYMESEPLTLQLFIGTAD
DRLLRPHAFYQVHRITGKTVSTPSHEIMQANTKVLEIPLLPESNMRAIIDCAGILKLRNS
DIELRKGETDIGRKNTRVRMVFRVHINQPNGRTVSLQTASNPIECSQRSAQELPLVDRQS
VDSCPATGGERMLISGHNFQPDSKVVFVEKGQDGHHIWEMEAKVEKDSFKSTALLVEIPT
YRNQRISSPVLVNFYICNGKRKRSQYQRFNYLPCNVPTIKTEPHDDYELPRLCAQQHSPG
ITKPYYALQAVPSMMPSDNRACVTAAYGSQRLTAKPLSLSCSSSPSTSPKLQDLSPTHFS
PQCLSPGLNPGIQPSAIPHVSAIQPTPGRYQQSVLYPSGSASSSPGSHPSTPGSAPELIF
SPSHSLTQSPVTSENTELPKVPVRSGPSPLLQEEGAPATQAISIKQEPQELDQVYLDDVN
EIIRNDLSSISVHTHA
NT seq
2571 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcagcagatgaagatgcatacagctacacacccaacatcagcctttcccttcca
ctgagtagcccttgcattcccacccagtaccacaaccttcagaccagtccctccatttca
gtttcaatcagccagccttcatcattctcccccagtgaagacatgggctcgatgggatac
tatcagtcatctggccccaatggagcccctgctctggaaagtcctcgcattgagatcaca
gcttacagtcagttccctgaagacgaggtggaagagaacaatgcacctgtatctaagcgt
gttaactctgttgtgactttaacattgcctagtggtgaaggctaccgtgacccaagctgc
ctgagcccagcgagcagtgtttcatcacgtagctgtcactcagaggcttcgtcatatgag
tcaggctactcatgcaattatgataactcaccacagaactccccctggcagtcaccatgt
gtctcccccaaaggttcctcttcattgctgtctggaaccctgggcaccacacctcaccaa
tcacctacagggtcgcctcgcacaagtgtgactgatgaaagctggactgcacctcgtggc
tcccgctccaactccccttgtggtgggaaacggaagtacagctttagtggcaacgcctct
cagaagtaccatccttattcacctaaccagtcaccaggactgtctccacaaacctcacct
cgcctcagcatgactgaagatacatggctgccgaatacaaaccagtacaccaattctgcc
attgtggcagccattaatgccctcagcactgatggaattactgatattggagaggggatt
ccactcaaggccaggagaaccagcatggagcatagtgcttctgtcagcctcaagactgag
cctggaagcgaagagatgaatgcaaagctgtgtcaagaggactactccacctcacgcctg
gcatttaaaaaagagggctacactagctttctggatgtaccacatcatccatattggtct
aaaccaaagccctatatcagcccaaccttgccagctcttgactggcagctgccctccagt
tctgggccatacagcttacagattgaggttcaacctaaatctcaccatcgtgctcactat
gaaacagaaggaagcagaggggctgtaaaggctcttgccggaggacatccagttgttcag
cttcacggctacatggagagcgagcctctgactctgcagctgttcatcgggacggcagac
gaccgtctcctgcggccgcacgctttttaccaggtccaccgcatcacaggcaagaccgtg
tccacacccagccacgagatcatgcaggccaacaccaaagtgctggagattccactcctg
cctgagagcaacatgagggccataattgactgtgctgggattctgaaactgcggaactca
gacatcgagctgcggaaaggcgagacagatatcggaaggaagaacacacgtgtcaggatg
gtgttccgagtccatattaaccagcctaatggcaggaccgtgtccctgcagaccgcatcc
aaccccattgaatgctcccagcgttccgcacaggagctgcctctcgtggacaggcaaagt
gtggacagctgtcctgctacaggaggagagcgcatgctaatcagtggccataactttcaa
cccgactccaaagtggtgtttgttgagaaaggacaggatggtcatcacatatgggagatg
gaagccaaagttgaaaaggactcctttaaatctacagctttgcttgtggagattccaact
taccgaaaccaaagaatatccagccctgttctggtcaacttctacatatgcaacgggaaa
cggaagagaagccaataccaaagattcaactaccttccatgtaatgttcccaccataaag
acagagccacatgatgactatgagctccctcgcctgtgtgcacagcagcactcccccggc
atcaccaagccatattatgctctgcaagctgtgccttctatgatgccttcagataacaga
gcctgtgtgacagccgcttacggctctcagagacttacagcaaagcctttgtccctgtcc
tgctcctcctctcctagcaccagtcctaaactgcaggatctctcacccacacacttctct
cctcagtgcctatctccaggcttgaaccctgggattcagccaagtgccatccctcatgtc
tcagccatccagcccacccctggccgttaccagcagtctgttctctacccatcaggcagt
gcgtcctcctctccaggctctcatccctctaccccaggttcagcacctgagctcatcttc
agtcccagtcacagtttgacccagtctccagtcacaagtgagaacacagagctgcctaag
gttccagtaagaagtgggccatctcctctcttacaggaggaaggagcacctgccacacag
gccatcagcatcaaacaggagccacaagaactggatcaagtgtatctagatgatgtcaat
gagatcatacgaaatgacctgtccagcatctctgtccatacccacgcatag
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